Gene : Phvul.002G120500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR24015:SF562 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  1206
Name:  ? Phvul.002G120500 Secondary Identifier:  ? PAC:37176997
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G120500 0.5kb upstream 0.5kb upstream 1983 true Chr02: 25641946-25643928 Phaseolus vulgaris
Phvul.002G120500 0.5kb upstream 0.5kb upstream 500 false Chr02: 25641946-25642445 Phaseolus vulgaris
Phvul.002G120500 0.5kb downstream 0.5kb downstream 1983 true Chr02: 25642446-25644428 Phaseolus vulgaris
Phvul.002G120500 0.5kb downstream 0.5kb downstream 500 false Chr02: 25643929-25644428 Phaseolus vulgaris
Phvul.002G120500 1.0kb upstream 1.0kb upstream 2483 true Chr02: 25641446-25643928 Phaseolus vulgaris
Phvul.002G120500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 25641446-25642445 Phaseolus vulgaris
Phvul.002G120500 1.0kb downstream 1.0kb downstream 2483 true Chr02: 25642446-25644928 Phaseolus vulgaris
Phvul.002G120500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 25643929-25644928 Phaseolus vulgaris
Phvul.002G120500 2.0kb upstream 2.0kb upstream 3483 true Chr02: 25640446-25643928 Phaseolus vulgaris
Phvul.002G120500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 25640446-25642445 Phaseolus vulgaris
Phvul.002G120500 2.0kb downstream 2.0kb downstream 3483 true Chr02: 25642446-25645928 Phaseolus vulgaris
Phvul.002G120500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 25643929-25645928 Phaseolus vulgaris
Phvul.002G120500 5.0kb upstream 5.0kb upstream 6483 true Chr02: 25637446-25643928 Phaseolus vulgaris
Phvul.002G120500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 25637446-25642445 Phaseolus vulgaris
Phvul.002G120500 5.0kb downstream 5.0kb downstream 6483 true Chr02: 25642446-25648928 Phaseolus vulgaris
Phvul.002G120500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 25643929-25648928 Phaseolus vulgaris
Phvul.002G120500 10.0kb upstream 10.0kb upstream 11483 true Chr02: 25632446-25643928 Phaseolus vulgaris
Phvul.002G120500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 25632446-25642445 Phaseolus vulgaris
Phvul.002G120500 10.0kb downstream 10.0kb downstream 11483 true Chr02: 25642446-25653928 Phaseolus vulgaris
Phvul.002G120500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 25643929-25653928 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314251 5265 Fabidae View MSA
124050221 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.49617 0.0 26.0588   High
cufflinks 2.93594 0.0 9.10233    
cufflinks 1.97437 0.0 6.39583    
cufflinks 5.83262 0.0 16.8016   High
cufflinks 0.992149 0.0 3.47917    
cufflinks 1.7759 0.0 5.82447    
cufflinks 0.987576 0.0 3.45414    
cufflinks 1.18431 0.0 4.06957    
cufflinks 0.813972 0.0 2.90619   Low
cufflinks 4.48635 0.0 13.2616    
cufflinks 1.36938 0.0 4.63553    

0 Strain