Gene : Phvul.002G124000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12121:SF42 - CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 4-RELATED Genomic Order:  1241
Name:  ? Phvul.002G124000 Secondary Identifier:  ? PAC:37174849
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G124000 0.5kb upstream 0.5kb upstream 4553 true Chr02: 26290724-26295276 Phaseolus vulgaris
Phvul.002G124000 0.5kb upstream 0.5kb upstream 500 false Chr02: 26290724-26291223 Phaseolus vulgaris
Phvul.002G124000 0.5kb downstream 0.5kb downstream 4553 true Chr02: 26291224-26295776 Phaseolus vulgaris
Phvul.002G124000 0.5kb downstream 0.5kb downstream 500 false Chr02: 26295277-26295776 Phaseolus vulgaris
Phvul.002G124000 1.0kb upstream 1.0kb upstream 5053 true Chr02: 26290224-26295276 Phaseolus vulgaris
Phvul.002G124000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 26290224-26291223 Phaseolus vulgaris
Phvul.002G124000 1.0kb downstream 1.0kb downstream 5053 true Chr02: 26291224-26296276 Phaseolus vulgaris
Phvul.002G124000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 26295277-26296276 Phaseolus vulgaris
Phvul.002G124000 2.0kb upstream 2.0kb upstream 6053 true Chr02: 26289224-26295276 Phaseolus vulgaris
Phvul.002G124000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 26289224-26291223 Phaseolus vulgaris
Phvul.002G124000 2.0kb downstream 2.0kb downstream 6053 true Chr02: 26291224-26297276 Phaseolus vulgaris
Phvul.002G124000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 26295277-26297276 Phaseolus vulgaris
Phvul.002G124000 5.0kb upstream 5.0kb upstream 9053 true Chr02: 26286224-26295276 Phaseolus vulgaris
Phvul.002G124000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 26286224-26291223 Phaseolus vulgaris
Phvul.002G124000 5.0kb downstream 5.0kb downstream 9053 true Chr02: 26291224-26300276 Phaseolus vulgaris
Phvul.002G124000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 26295277-26300276 Phaseolus vulgaris
Phvul.002G124000 10.0kb upstream 10.0kb upstream 14053 true Chr02: 26281224-26295276 Phaseolus vulgaris
Phvul.002G124000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 26281224-26291223 Phaseolus vulgaris
Phvul.002G124000 10.0kb downstream 10.0kb downstream 14053 true Chr02: 26291224-26305276 Phaseolus vulgaris
Phvul.002G124000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 26295277-26305276 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299539 5265 Fabidae View MSA
124063704 5270 Rosid View MSA
123740747 5271 Pentapetalae View MSA
122787902 5272 Eudicot View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.16236 0.0 18.6159    
cufflinks 6.13633 0.0 21.3366    
cufflinks 19.6226 0.0 57.9059   High
cufflinks 6.16754 0.0 21.657    
cufflinks 5.13121 0.0 18.3785    
cufflinks 11.0973 0.0 35.1529   High
cufflinks 4.76689 0.0 18.8377    
cufflinks 6.25401 0.0 21.5549    
cufflinks 5.3251 0.0 19.2628    
cufflinks 5.68544 0.0 20.0854    
cufflinks 3.68055 0.0 14.7732   Low

0 Strain