Gene : Phvul.002G113800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR33070:SF3 - EXPRESSED PROTEIN Genomic Order:  1138
Name:  ? Phvul.002G113800 Secondary Identifier:  ? PAC:37175174
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G113800 0.5kb upstream 0.5kb upstream 1570 true Chr02: 24401386-24402955 Phaseolus vulgaris
Phvul.002G113800 0.5kb upstream 0.5kb upstream 500 false Chr02: 24402456-24402955 Phaseolus vulgaris
Phvul.002G113800 0.5kb downstream 0.5kb downstream 1570 true Chr02: 24400886-24402455 Phaseolus vulgaris
Phvul.002G113800 0.5kb downstream 0.5kb downstream 500 false Chr02: 24400886-24401385 Phaseolus vulgaris
Phvul.002G113800 1.0kb upstream 1.0kb upstream 2070 true Chr02: 24401386-24403455 Phaseolus vulgaris
Phvul.002G113800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 24402456-24403455 Phaseolus vulgaris
Phvul.002G113800 1.0kb downstream 1.0kb downstream 2070 true Chr02: 24400386-24402455 Phaseolus vulgaris
Phvul.002G113800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 24400386-24401385 Phaseolus vulgaris
Phvul.002G113800 2.0kb upstream 2.0kb upstream 3070 true Chr02: 24401386-24404455 Phaseolus vulgaris
Phvul.002G113800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 24402456-24404455 Phaseolus vulgaris
Phvul.002G113800 2.0kb downstream 2.0kb downstream 3070 true Chr02: 24399386-24402455 Phaseolus vulgaris
Phvul.002G113800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 24399386-24401385 Phaseolus vulgaris
Phvul.002G113800 5.0kb upstream 5.0kb upstream 6070 true Chr02: 24401386-24407455 Phaseolus vulgaris
Phvul.002G113800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 24402456-24407455 Phaseolus vulgaris
Phvul.002G113800 5.0kb downstream 5.0kb downstream 6070 true Chr02: 24396386-24402455 Phaseolus vulgaris
Phvul.002G113800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 24396386-24401385 Phaseolus vulgaris
Phvul.002G113800 10.0kb upstream 10.0kb upstream 11070 true Chr02: 24401386-24412455 Phaseolus vulgaris
Phvul.002G113800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 24402456-24412455 Phaseolus vulgaris
Phvul.002G113800 10.0kb downstream 10.0kb downstream 11070 true Chr02: 24391386-24402455 Phaseolus vulgaris
Phvul.002G113800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 24391386-24401385 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314618 5265 Fabidae View MSA
124069570 5270 Rosid View MSA
123753428 5271 Pentapetalae View MSA
122797760 5272 Eudicot View MSA
122043809 5273 Angiosperm View MSA
121310191 5274 Embryophyte View MSA
123347751 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.318288 0.0 1.30359 Low  
cufflinks 0.335928 0.0 1.36873 Low  
cufflinks 0.368863 0.0 1.48501 Low  
cufflinks 0.673828 0.0 2.60448    
cufflinks 0.67733 0.0 2.63931    
cufflinks 0.864555 0.0 3.26934    
cufflinks 0.0508277 0.0 0.24893 Low Low
cufflinks 0.14547 0.0 0.636965 Low  
cufflinks 0.0540977 0.0 0.262761 Low Low
cufflinks 0.0244525 0.0 0.130794 Low Low
cufflinks 1.3027 0.0 4.793   High

0 Strain