Gene : Phvul.002G113900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10629:SF30 - DNA (CYTOSINE-5)-METHYLTRANSFERASE CMT1-RELATED Genomic Order:  1139
Name:  ? Phvul.002G113900 Secondary Identifier:  ? PAC:37178023
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G113900 0.5kb upstream 0.5kb upstream 6332 true Chr02: 24405483-24411814 Phaseolus vulgaris
Phvul.002G113900 0.5kb upstream 0.5kb upstream 500 false Chr02: 24411315-24411814 Phaseolus vulgaris
Phvul.002G113900 0.5kb downstream 0.5kb downstream 6332 true Chr02: 24404983-24411314 Phaseolus vulgaris
Phvul.002G113900 0.5kb downstream 0.5kb downstream 500 false Chr02: 24404983-24405482 Phaseolus vulgaris
Phvul.002G113900 1.0kb upstream 1.0kb upstream 6832 true Chr02: 24405483-24412314 Phaseolus vulgaris
Phvul.002G113900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 24411315-24412314 Phaseolus vulgaris
Phvul.002G113900 1.0kb downstream 1.0kb downstream 6832 true Chr02: 24404483-24411314 Phaseolus vulgaris
Phvul.002G113900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 24404483-24405482 Phaseolus vulgaris
Phvul.002G113900 2.0kb upstream 2.0kb upstream 7832 true Chr02: 24405483-24413314 Phaseolus vulgaris
Phvul.002G113900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 24411315-24413314 Phaseolus vulgaris
Phvul.002G113900 2.0kb downstream 2.0kb downstream 7832 true Chr02: 24403483-24411314 Phaseolus vulgaris
Phvul.002G113900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 24403483-24405482 Phaseolus vulgaris
Phvul.002G113900 5.0kb upstream 5.0kb upstream 10832 true Chr02: 24405483-24416314 Phaseolus vulgaris
Phvul.002G113900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 24411315-24416314 Phaseolus vulgaris
Phvul.002G113900 5.0kb downstream 5.0kb downstream 10832 true Chr02: 24400483-24411314 Phaseolus vulgaris
Phvul.002G113900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 24400483-24405482 Phaseolus vulgaris
Phvul.002G113900 10.0kb upstream 10.0kb upstream 15832 true Chr02: 24405483-24421314 Phaseolus vulgaris
Phvul.002G113900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 24411315-24421314 Phaseolus vulgaris
Phvul.002G113900 10.0kb downstream 10.0kb downstream 15832 true Chr02: 24395483-24411314 Phaseolus vulgaris
Phvul.002G113900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 24395483-24405482 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297560 5265 Fabidae View MSA
124071027 5270 Rosid View MSA
123743070 5271 Pentapetalae View MSA
122794759 5272 Eudicot View MSA
122046536 5273 Angiosperm View MSA
121345495 5274 Embryophyte View MSA
123428443 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.71759 0.0 5.25314    
cufflinks 8.45288 0.0 22.2789    
cufflinks 2.80983 0.0 8.13366    
cufflinks 2.10019 0.0 6.34541    
cufflinks 4.7939 0.0 13.2786    
cufflinks 6.53144 0.0 17.524    
cufflinks 6.59587 0.0 17.6948    
cufflinks 6.99713 0.0 18.6317    
cufflinks 6.06033 0.0 16.4018    
cufflinks 0.537142 0.0 1.87878   Low
cufflinks 5.60552 0.0 15.2866    

0 Strain