Gene : Phvul.002G119200 P. vulgaris v2.1
Defline:  (1 of 3) PTHR15348:SF6 - AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5-RELATED Genomic Order:  1193
Name:  ? Phvul.002G119200 Secondary Identifier:  ? PAC:37175303
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G119200 0.5kb upstream 0.5kb upstream 6763 true Chr02: 25436046-25442808 Phaseolus vulgaris
Phvul.002G119200 0.5kb upstream 0.5kb upstream 500 false Chr02: 25442309-25442808 Phaseolus vulgaris
Phvul.002G119200 0.5kb downstream 0.5kb downstream 6763 true Chr02: 25435546-25442308 Phaseolus vulgaris
Phvul.002G119200 0.5kb downstream 0.5kb downstream 500 false Chr02: 25435546-25436045 Phaseolus vulgaris
Phvul.002G119200 1.0kb upstream 1.0kb upstream 7263 true Chr02: 25436046-25443308 Phaseolus vulgaris
Phvul.002G119200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 25442309-25443308 Phaseolus vulgaris
Phvul.002G119200 1.0kb downstream 1.0kb downstream 7263 true Chr02: 25435046-25442308 Phaseolus vulgaris
Phvul.002G119200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 25435046-25436045 Phaseolus vulgaris
Phvul.002G119200 2.0kb upstream 2.0kb upstream 8263 true Chr02: 25436046-25444308 Phaseolus vulgaris
Phvul.002G119200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 25442309-25444308 Phaseolus vulgaris
Phvul.002G119200 2.0kb downstream 2.0kb downstream 8263 true Chr02: 25434046-25442308 Phaseolus vulgaris
Phvul.002G119200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 25434046-25436045 Phaseolus vulgaris
Phvul.002G119200 5.0kb upstream 5.0kb upstream 11263 true Chr02: 25436046-25447308 Phaseolus vulgaris
Phvul.002G119200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 25442309-25447308 Phaseolus vulgaris
Phvul.002G119200 5.0kb downstream 5.0kb downstream 11263 true Chr02: 25431046-25442308 Phaseolus vulgaris
Phvul.002G119200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 25431046-25436045 Phaseolus vulgaris
Phvul.002G119200 10.0kb upstream 10.0kb upstream 16263 true Chr02: 25436046-25452308 Phaseolus vulgaris
Phvul.002G119200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 25442309-25452308 Phaseolus vulgaris
Phvul.002G119200 10.0kb downstream 10.0kb downstream 16263 true Chr02: 25426046-25442308 Phaseolus vulgaris
Phvul.002G119200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 25426046-25436045 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302653 5265 Fabidae View MSA
124071452 5270 Rosid View MSA
123742990 5271 Pentapetalae View MSA
122787773 5272 Eudicot View MSA
122045434 5273 Angiosperm View MSA
121346901 5274 Embryophyte View MSA
123426327 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.46882 0.0 10.0545    
cufflinks 5.65878 0.0 15.6372   High
cufflinks 2.49155 0.0 7.47443   Low
cufflinks 3.18113 0.0 9.38365    
cufflinks 2.60113 0.0 7.82305   Low
cufflinks 4.30267 0.0 12.181    
cufflinks 3.90949 0.0 11.1575    
cufflinks 4.11327 0.0 11.658    
cufflinks 2.98575 0.0 8.78796    
cufflinks 5.44889 0.0 15.1281   High
cufflinks 2.90628 0.0 8.61063    

0 Strain