Gene : Phvul.002G242800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33199:SF3 - MACPF DOMAIN-CONTAINING PROTEIN CAD1 Genomic Order:  2397
Name:  ? Phvul.002G242800 Secondary Identifier:  ? PAC:37176798
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G242800 0.5kb upstream 0.5kb upstream 6251 true Chr02: 41479844-41486094 Phaseolus vulgaris
Phvul.002G242800 0.5kb upstream 0.5kb upstream 500 false Chr02: 41479844-41480343 Phaseolus vulgaris
Phvul.002G242800 0.5kb downstream 0.5kb downstream 6251 true Chr02: 41480344-41486594 Phaseolus vulgaris
Phvul.002G242800 0.5kb downstream 0.5kb downstream 500 false Chr02: 41486095-41486594 Phaseolus vulgaris
Phvul.002G242800 1.0kb upstream 1.0kb upstream 6751 true Chr02: 41479344-41486094 Phaseolus vulgaris
Phvul.002G242800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 41479344-41480343 Phaseolus vulgaris
Phvul.002G242800 1.0kb downstream 1.0kb downstream 6751 true Chr02: 41480344-41487094 Phaseolus vulgaris
Phvul.002G242800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 41486095-41487094 Phaseolus vulgaris
Phvul.002G242800 2.0kb upstream 2.0kb upstream 7751 true Chr02: 41478344-41486094 Phaseolus vulgaris
Phvul.002G242800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 41478344-41480343 Phaseolus vulgaris
Phvul.002G242800 2.0kb downstream 2.0kb downstream 7751 true Chr02: 41480344-41488094 Phaseolus vulgaris
Phvul.002G242800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 41486095-41488094 Phaseolus vulgaris
Phvul.002G242800 5.0kb upstream 5.0kb upstream 10751 true Chr02: 41475344-41486094 Phaseolus vulgaris
Phvul.002G242800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 41475344-41480343 Phaseolus vulgaris
Phvul.002G242800 5.0kb downstream 5.0kb downstream 10751 true Chr02: 41480344-41491094 Phaseolus vulgaris
Phvul.002G242800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 41486095-41491094 Phaseolus vulgaris
Phvul.002G242800 10.0kb upstream 10.0kb upstream 15751 true Chr02: 41470344-41486094 Phaseolus vulgaris
Phvul.002G242800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 41470344-41480343 Phaseolus vulgaris
Phvul.002G242800 10.0kb downstream 10.0kb downstream 15751 true Chr02: 41480344-41496094 Phaseolus vulgaris
Phvul.002G242800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 41486095-41496094 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306269 5265 Fabidae View MSA
124063432 5270 Rosid View MSA
123741533 5271 Pentapetalae View MSA
122797212 5272 Eudicot View MSA
122044022 5273 Angiosperm View MSA
121349025 5274 Embryophyte View MSA
123381129 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.23076 0.0 24.7362   High
cufflinks 6.01157 0.0 16.7253    
cufflinks 4.99043 0.0 14.0687   Low
cufflinks 5.40491 0.0 15.2098   Low
cufflinks 5.86813 0.0 16.3988    
cufflinks 7.00185 0.0 19.1849    
cufflinks 9.70345 0.0 25.8638   High
cufflinks 6.81135 0.0 18.6487    
cufflinks 10.4843 0.0 27.8424   High
cufflinks 6.38838 0.0 17.706    
cufflinks 6.69387 0.0 18.5068    

0 Strain