Gene : Phvul.002G245100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33596:SF3 - COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED Genomic Order:  2423
Name:  ? Phvul.002G245100 Secondary Identifier:  ? PAC:37178848
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G245100 0.5kb upstream 0.5kb upstream 2697 true Chr02: 41714954-41717650 Phaseolus vulgaris
Phvul.002G245100 0.5kb upstream 0.5kb upstream 500 false Chr02: 41714954-41715453 Phaseolus vulgaris
Phvul.002G245100 0.5kb downstream 0.5kb downstream 2697 true Chr02: 41715454-41718150 Phaseolus vulgaris
Phvul.002G245100 0.5kb downstream 0.5kb downstream 500 false Chr02: 41717651-41718150 Phaseolus vulgaris
Phvul.002G245100 1.0kb upstream 1.0kb upstream 3197 true Chr02: 41714454-41717650 Phaseolus vulgaris
Phvul.002G245100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 41714454-41715453 Phaseolus vulgaris
Phvul.002G245100 1.0kb downstream 1.0kb downstream 3197 true Chr02: 41715454-41718650 Phaseolus vulgaris
Phvul.002G245100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 41717651-41718650 Phaseolus vulgaris
Phvul.002G245100 2.0kb upstream 2.0kb upstream 4197 true Chr02: 41713454-41717650 Phaseolus vulgaris
Phvul.002G245100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 41713454-41715453 Phaseolus vulgaris
Phvul.002G245100 2.0kb downstream 2.0kb downstream 4197 true Chr02: 41715454-41719650 Phaseolus vulgaris
Phvul.002G245100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 41717651-41719650 Phaseolus vulgaris
Phvul.002G245100 5.0kb upstream 5.0kb upstream 7197 true Chr02: 41710454-41717650 Phaseolus vulgaris
Phvul.002G245100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 41710454-41715453 Phaseolus vulgaris
Phvul.002G245100 5.0kb downstream 5.0kb downstream 7197 true Chr02: 41715454-41722650 Phaseolus vulgaris
Phvul.002G245100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 41717651-41722650 Phaseolus vulgaris
Phvul.002G245100 10.0kb upstream 10.0kb upstream 12197 true Chr02: 41705454-41717650 Phaseolus vulgaris
Phvul.002G245100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 41705454-41715453 Phaseolus vulgaris
Phvul.002G245100 10.0kb downstream 10.0kb downstream 12197 true Chr02: 41715454-41727650 Phaseolus vulgaris
Phvul.002G245100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 41717651-41727650 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026496 5273 Angiosperm View MSA
122303130 5265 Fabidae View MSA
124068573 5270 Rosid View MSA
123739751 5271 Pentapetalae View MSA
122786208 5272 Eudicot View MSA
121350668 5274 Embryophyte View MSA
123381843 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.3472 0.0 83.5847    
cufflinks 33.9355 0.0 89.9662 High  
cufflinks 70.6217 0.0 182.551 High  
cufflinks 49.1056 0.0 127.498 High  
cufflinks 88.5033 0.0 229.258 High High
cufflinks 31.6039 0.0 84.3114    
cufflinks 20.8583 0.0 57.4333    
cufflinks 15.2906 0.0 43.3844   Low
cufflinks 15.3963 0.0 43.6642   Low
cufflinks 54.6129 0.0 141.557 High  
cufflinks 80.3646 0.0 207.899 High High

0 Strain