Gene : Phvul.002G235300 P. vulgaris v2.1
Defline:  (1 of 1) PF13812//PF14432 - Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2321
Name:  ? Phvul.002G235300 Secondary Identifier:  ? PAC:37177027
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G235300 0.5kb upstream 0.5kb upstream 7715 true Chr02: 40670573-40678287 Phaseolus vulgaris
Phvul.002G235300 0.5kb upstream 0.5kb upstream 500 false Chr02: 40670573-40671072 Phaseolus vulgaris
Phvul.002G235300 0.5kb downstream 0.5kb downstream 7715 true Chr02: 40671073-40678787 Phaseolus vulgaris
Phvul.002G235300 0.5kb downstream 0.5kb downstream 500 false Chr02: 40678288-40678787 Phaseolus vulgaris
Phvul.002G235300 1.0kb upstream 1.0kb upstream 8215 true Chr02: 40670073-40678287 Phaseolus vulgaris
Phvul.002G235300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 40670073-40671072 Phaseolus vulgaris
Phvul.002G235300 1.0kb downstream 1.0kb downstream 8215 true Chr02: 40671073-40679287 Phaseolus vulgaris
Phvul.002G235300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 40678288-40679287 Phaseolus vulgaris
Phvul.002G235300 2.0kb upstream 2.0kb upstream 9215 true Chr02: 40669073-40678287 Phaseolus vulgaris
Phvul.002G235300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 40669073-40671072 Phaseolus vulgaris
Phvul.002G235300 2.0kb downstream 2.0kb downstream 9215 true Chr02: 40671073-40680287 Phaseolus vulgaris
Phvul.002G235300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 40678288-40680287 Phaseolus vulgaris
Phvul.002G235300 5.0kb upstream 5.0kb upstream 12215 true Chr02: 40666073-40678287 Phaseolus vulgaris
Phvul.002G235300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 40666073-40671072 Phaseolus vulgaris
Phvul.002G235300 5.0kb downstream 5.0kb downstream 12215 true Chr02: 40671073-40683287 Phaseolus vulgaris
Phvul.002G235300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 40678288-40683287 Phaseolus vulgaris
Phvul.002G235300 10.0kb upstream 10.0kb upstream 17215 true Chr02: 40661073-40678287 Phaseolus vulgaris
Phvul.002G235300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 40661073-40671072 Phaseolus vulgaris
Phvul.002G235300 10.0kb downstream 10.0kb downstream 17215 true Chr02: 40671073-40688287 Phaseolus vulgaris
Phvul.002G235300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 40678288-40688287 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299130 5265 Fabidae View MSA
124066388 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.50429 0.0 7.25879    
cufflinks 3.79798 0.0 10.5837   High
cufflinks 3.13098 0.0 8.85455    
cufflinks 2.31626 0.0 6.84649   Low
cufflinks 2.22689 0.0 6.62069   Low
cufflinks 3.09865 0.0 8.79064    
cufflinks 3.13398 0.0 8.89595    
cufflinks 3.52993 0.0 9.84967    
cufflinks 3.47044 0.0 9.78019    
cufflinks 3.77305 0.0 10.5386   High
cufflinks 2.55431 0.0 7.46006    

0 Strain