Gene : Phvul.002G227200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10639:SF7 - CLATHRIN LIGHT CHAIN Genomic Order:  2247
Name:  ? Phvul.002G227200 Secondary Identifier:  ? PAC:37174346
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G227200 0.5kb upstream 0.5kb upstream 3355 true Chr02: 39866463-39869817 Phaseolus vulgaris
Phvul.002G227200 0.5kb upstream 0.5kb upstream 500 false Chr02: 39866463-39866962 Phaseolus vulgaris
Phvul.002G227200 0.5kb downstream 0.5kb downstream 3355 true Chr02: 39866963-39870317 Phaseolus vulgaris
Phvul.002G227200 0.5kb downstream 0.5kb downstream 500 false Chr02: 39869818-39870317 Phaseolus vulgaris
Phvul.002G227200 1.0kb upstream 1.0kb upstream 3855 true Chr02: 39865963-39869817 Phaseolus vulgaris
Phvul.002G227200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39865963-39866962 Phaseolus vulgaris
Phvul.002G227200 1.0kb downstream 1.0kb downstream 3855 true Chr02: 39866963-39870817 Phaseolus vulgaris
Phvul.002G227200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39869818-39870817 Phaseolus vulgaris
Phvul.002G227200 2.0kb upstream 2.0kb upstream 4855 true Chr02: 39864963-39869817 Phaseolus vulgaris
Phvul.002G227200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39864963-39866962 Phaseolus vulgaris
Phvul.002G227200 2.0kb downstream 2.0kb downstream 4855 true Chr02: 39866963-39871817 Phaseolus vulgaris
Phvul.002G227200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39869818-39871817 Phaseolus vulgaris
Phvul.002G227200 5.0kb upstream 5.0kb upstream 7855 true Chr02: 39861963-39869817 Phaseolus vulgaris
Phvul.002G227200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39861963-39866962 Phaseolus vulgaris
Phvul.002G227200 5.0kb downstream 5.0kb downstream 7855 true Chr02: 39866963-39874817 Phaseolus vulgaris
Phvul.002G227200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39869818-39874817 Phaseolus vulgaris
Phvul.002G227200 10.0kb upstream 10.0kb upstream 12855 true Chr02: 39856963-39869817 Phaseolus vulgaris
Phvul.002G227200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39856963-39866962 Phaseolus vulgaris
Phvul.002G227200 10.0kb downstream 10.0kb downstream 12855 true Chr02: 39866963-39879817 Phaseolus vulgaris
Phvul.002G227200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39869818-39879817 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296653 5265 Fabidae View MSA
124061601 5270 Rosid View MSA
123752626 5271 Pentapetalae View MSA
122796141 5272 Eudicot View MSA
122042029 5273 Angiosperm View MSA
121347289 5274 Embryophyte View MSA
123426291 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.8723 0.0 54.1663   Low
cufflinks 45.9716 0.0 119.918 High  
cufflinks 65.3057 0.0 173.905 High  
cufflinks 48.3194 0.0 126.332 High  
cufflinks 72.0088 0.0 193.152 High High
cufflinks 54.9695 0.0 144.808 High  
cufflinks 42.1763 0.0 110.055 High  
cufflinks 31.068 0.0 80.3658 High  
cufflinks 49.2856 0.0 129.502 High  
cufflinks 31.0715 0.0 80.3203    
cufflinks 94.7567 0.0 261.022 High High

0 Strain