Gene : Phvul.002G227400 P. vulgaris v2.1
Defline:  (1 of 4) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  2249
Name:  ? Phvul.002G227400 Secondary Identifier:  ? PAC:37174841
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G227400 0.5kb upstream 0.5kb upstream 16624 true Chr02: 39885062-39901685 Phaseolus vulgaris
Phvul.002G227400 0.5kb upstream 0.5kb upstream 500 false Chr02: 39901186-39901685 Phaseolus vulgaris
Phvul.002G227400 0.5kb downstream 0.5kb downstream 16624 true Chr02: 39884562-39901185 Phaseolus vulgaris
Phvul.002G227400 0.5kb downstream 0.5kb downstream 500 false Chr02: 39884562-39885061 Phaseolus vulgaris
Phvul.002G227400 1.0kb upstream 1.0kb upstream 17124 true Chr02: 39885062-39902185 Phaseolus vulgaris
Phvul.002G227400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39901186-39902185 Phaseolus vulgaris
Phvul.002G227400 1.0kb downstream 1.0kb downstream 17124 true Chr02: 39884062-39901185 Phaseolus vulgaris
Phvul.002G227400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39884062-39885061 Phaseolus vulgaris
Phvul.002G227400 2.0kb upstream 2.0kb upstream 18124 true Chr02: 39885062-39903185 Phaseolus vulgaris
Phvul.002G227400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39901186-39903185 Phaseolus vulgaris
Phvul.002G227400 2.0kb downstream 2.0kb downstream 18124 true Chr02: 39883062-39901185 Phaseolus vulgaris
Phvul.002G227400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39883062-39885061 Phaseolus vulgaris
Phvul.002G227400 5.0kb upstream 5.0kb upstream 21124 true Chr02: 39885062-39906185 Phaseolus vulgaris
Phvul.002G227400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39901186-39906185 Phaseolus vulgaris
Phvul.002G227400 5.0kb downstream 5.0kb downstream 21124 true Chr02: 39880062-39901185 Phaseolus vulgaris
Phvul.002G227400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39880062-39885061 Phaseolus vulgaris
Phvul.002G227400 10.0kb upstream 10.0kb upstream 26124 true Chr02: 39885062-39911185 Phaseolus vulgaris
Phvul.002G227400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39901186-39911185 Phaseolus vulgaris
Phvul.002G227400 10.0kb downstream 10.0kb downstream 26124 true Chr02: 39875062-39901185 Phaseolus vulgaris
Phvul.002G227400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39875062-39885061 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309838 5265 Fabidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.5262 0.0 10.5177    
cufflinks 16.2223 0.0 42.4113   High
cufflinks 0.131716 0.0 0.539828 Low  
cufflinks 1.46409 0.0 4.87206    
cufflinks 0.439825 0.0 1.64884 Low  
cufflinks 9.91163 0.0 26.7611   High
cufflinks 0.0215531 0.0 0.105557 Low Low
cufflinks 0.0155929 0.0 0.0789509 Low Low
cufflinks 0.0714305 0.0 0.310218 Low  
cufflinks 0.274429 0.0 1.06443 Low  
cufflinks 2.50357 0.0 7.82801    

0 Strain