Gene : Phvul.002G225801 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12428//PTHR12428:SF23 - OXA1 // SUBFAMILY NOT NAMED Genomic Order:  2234
Name:  ? Phvul.002G225801 Secondary Identifier:  ? PAC:37178254
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G225801 0.5kb upstream 0.5kb upstream 17062 true Chr02: 39731833-39748894 Phaseolus vulgaris
Phvul.002G225801 0.5kb upstream 0.5kb upstream 500 false Chr02: 39748395-39748894 Phaseolus vulgaris
Phvul.002G225801 0.5kb downstream 0.5kb downstream 17062 true Chr02: 39731333-39748394 Phaseolus vulgaris
Phvul.002G225801 0.5kb downstream 0.5kb downstream 500 false Chr02: 39731333-39731832 Phaseolus vulgaris
Phvul.002G225801 1.0kb upstream 1.0kb upstream 17562 true Chr02: 39731833-39749394 Phaseolus vulgaris
Phvul.002G225801 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39748395-39749394 Phaseolus vulgaris
Phvul.002G225801 1.0kb downstream 1.0kb downstream 17562 true Chr02: 39730833-39748394 Phaseolus vulgaris
Phvul.002G225801 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39730833-39731832 Phaseolus vulgaris
Phvul.002G225801 2.0kb upstream 2.0kb upstream 18562 true Chr02: 39731833-39750394 Phaseolus vulgaris
Phvul.002G225801 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39748395-39750394 Phaseolus vulgaris
Phvul.002G225801 2.0kb downstream 2.0kb downstream 18562 true Chr02: 39729833-39748394 Phaseolus vulgaris
Phvul.002G225801 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39729833-39731832 Phaseolus vulgaris
Phvul.002G225801 5.0kb upstream 5.0kb upstream 21562 true Chr02: 39731833-39753394 Phaseolus vulgaris
Phvul.002G225801 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39748395-39753394 Phaseolus vulgaris
Phvul.002G225801 5.0kb downstream 5.0kb downstream 21562 true Chr02: 39726833-39748394 Phaseolus vulgaris
Phvul.002G225801 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39726833-39731832 Phaseolus vulgaris
Phvul.002G225801 10.0kb upstream 10.0kb upstream 26562 true Chr02: 39731833-39758394 Phaseolus vulgaris
Phvul.002G225801 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39748395-39758394 Phaseolus vulgaris
Phvul.002G225801 10.0kb downstream 10.0kb downstream 26562 true Chr02: 39721833-39748394 Phaseolus vulgaris
Phvul.002G225801 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39721833-39731832 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311244 5265 Fabidae View MSA
124065140 5270 Rosid View MSA
123750990 5271 Pentapetalae View MSA
122794726 5272 Eudicot View MSA
122051610 5273 Angiosperm View MSA
121347323 5274 Embryophyte View MSA
123428331 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3426 0.0 38.042   High
cufflinks 10.2618 0.0 27.9935    
cufflinks 5.39585 0.0 15.584    
cufflinks 17.3734 0.0 45.7291   High
cufflinks 6.28343 0.0 18.019    
cufflinks 3.42094 0.0 10.4286   Low
cufflinks 6.70894 0.0 19.009    
cufflinks 15.8447 0.0 41.7046   High
cufflinks 7.75355 0.0 21.7411    
cufflinks 8.54009 0.0 23.664    
cufflinks 5.29363 0.0 15.4454    

0 Strain