Gene : Phvul.002G228200 P. vulgaris v2.1
Defline:  (1 of 1) K07456 - DNA mismatch repair protein MutS2 (mutS2) Genomic Order:  2256
Name:  ? Phvul.002G228200 Secondary Identifier:  ? PAC:37174650
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G228200 0.5kb upstream 0.5kb upstream 5790 true Chr02: 39971440-39977229 Phaseolus vulgaris
Phvul.002G228200 0.5kb upstream 0.5kb upstream 500 false Chr02: 39976730-39977229 Phaseolus vulgaris
Phvul.002G228200 0.5kb downstream 0.5kb downstream 5790 true Chr02: 39970940-39976729 Phaseolus vulgaris
Phvul.002G228200 0.5kb downstream 0.5kb downstream 500 false Chr02: 39970940-39971439 Phaseolus vulgaris
Phvul.002G228200 1.0kb upstream 1.0kb upstream 6290 true Chr02: 39971440-39977729 Phaseolus vulgaris
Phvul.002G228200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39976730-39977729 Phaseolus vulgaris
Phvul.002G228200 1.0kb downstream 1.0kb downstream 6290 true Chr02: 39970440-39976729 Phaseolus vulgaris
Phvul.002G228200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39970440-39971439 Phaseolus vulgaris
Phvul.002G228200 2.0kb upstream 2.0kb upstream 7290 true Chr02: 39971440-39978729 Phaseolus vulgaris
Phvul.002G228200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39976730-39978729 Phaseolus vulgaris
Phvul.002G228200 2.0kb downstream 2.0kb downstream 7290 true Chr02: 39969440-39976729 Phaseolus vulgaris
Phvul.002G228200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39969440-39971439 Phaseolus vulgaris
Phvul.002G228200 5.0kb upstream 5.0kb upstream 10290 true Chr02: 39971440-39981729 Phaseolus vulgaris
Phvul.002G228200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39976730-39981729 Phaseolus vulgaris
Phvul.002G228200 5.0kb downstream 5.0kb downstream 10290 true Chr02: 39966440-39976729 Phaseolus vulgaris
Phvul.002G228200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39966440-39971439 Phaseolus vulgaris
Phvul.002G228200 10.0kb upstream 10.0kb upstream 15290 true Chr02: 39971440-39986729 Phaseolus vulgaris
Phvul.002G228200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39976730-39986729 Phaseolus vulgaris
Phvul.002G228200 10.0kb downstream 10.0kb downstream 15290 true Chr02: 39961440-39976729 Phaseolus vulgaris
Phvul.002G228200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39961440-39971439 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306620 5265 Fabidae View MSA
124073530 5270 Rosid View MSA
123739589 5271 Pentapetalae View MSA
122790305 5272 Eudicot View MSA
122044988 5273 Angiosperm View MSA
121346721 5274 Embryophyte View MSA
123426571 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.27353 0.0 5.41132    
cufflinks 1.8365 0.0 7.33845    
cufflinks 7.79967 0.0 23.4322   High
cufflinks 0.441607 0.0 2.52204 Low Low
cufflinks 2.20181 0.0 8.33728    
cufflinks 4.96747 0.0 15.4474   High
cufflinks 1.1029 0.0 4.84961    
cufflinks 1.0603 0.0 4.69783    
cufflinks 1.50212 0.0 6.18935    
cufflinks 3.94771 0.0 13.3378    
cufflinks 1.67307 0.0 6.95316    

0 Strain