Gene : Phvul.002G228100 P. vulgaris v2.1
Defline:  (1 of 4) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  2255
Name:  ? Phvul.002G228100 Secondary Identifier:  ? PAC:37177237
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G228100 0.5kb upstream 0.5kb upstream 938 true Chr02: 39969655-39970592 Phaseolus vulgaris
Phvul.002G228100 0.5kb upstream 0.5kb upstream 500 false Chr02: 39970093-39970592 Phaseolus vulgaris
Phvul.002G228100 0.5kb downstream 0.5kb downstream 938 true Chr02: 39969155-39970092 Phaseolus vulgaris
Phvul.002G228100 0.5kb downstream 0.5kb downstream 500 false Chr02: 39969155-39969654 Phaseolus vulgaris
Phvul.002G228100 1.0kb upstream 1.0kb upstream 1438 true Chr02: 39969655-39971092 Phaseolus vulgaris
Phvul.002G228100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39970093-39971092 Phaseolus vulgaris
Phvul.002G228100 1.0kb downstream 1.0kb downstream 1438 true Chr02: 39968655-39970092 Phaseolus vulgaris
Phvul.002G228100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39968655-39969654 Phaseolus vulgaris
Phvul.002G228100 2.0kb upstream 2.0kb upstream 2438 true Chr02: 39969655-39972092 Phaseolus vulgaris
Phvul.002G228100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39970093-39972092 Phaseolus vulgaris
Phvul.002G228100 2.0kb downstream 2.0kb downstream 2438 true Chr02: 39967655-39970092 Phaseolus vulgaris
Phvul.002G228100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39967655-39969654 Phaseolus vulgaris
Phvul.002G228100 5.0kb upstream 5.0kb upstream 5438 true Chr02: 39969655-39975092 Phaseolus vulgaris
Phvul.002G228100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39970093-39975092 Phaseolus vulgaris
Phvul.002G228100 5.0kb downstream 5.0kb downstream 5438 true Chr02: 39964655-39970092 Phaseolus vulgaris
Phvul.002G228100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39964655-39969654 Phaseolus vulgaris
Phvul.002G228100 10.0kb upstream 10.0kb upstream 10438 true Chr02: 39969655-39980092 Phaseolus vulgaris
Phvul.002G228100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39970093-39980092 Phaseolus vulgaris
Phvul.002G228100 10.0kb downstream 10.0kb downstream 10438 true Chr02: 39959655-39970092 Phaseolus vulgaris
Phvul.002G228100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39959655-39969654 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121656191 5273 Angiosperm View MSA
122297777 5265 Fabidae View MSA
124036148 5270 Rosid View MSA
123609537 5271 Pentapetalae View MSA
122644185 5272 Eudicot View MSA
120928276 5274 Embryophyte View MSA
122968889 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2108 0.0 46.8189   High
cufflinks 0.110705 0.0 0.552929 Low  
cufflinks 1.26925 0.0 5.03754    
cufflinks 19.0317 0.0 56.1966   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.119813 0.0 0.586786 Low  
cufflinks 0.101226 0.0 0.512531 Low  
cufflinks 0.130885 0.0 0.635727 Low  
cufflinks 0.0601318 0.0 0.321638 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain