Gene : Phvul.002G198100 P. vulgaris v2.1
Defline:  (1 of 5) PTHR24015:SF884 - PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  1958
Name:  ? Phvul.002G198100 Secondary Identifier:  ? PAC:37178865
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G198100 0.5kb upstream 0.5kb upstream 3958 true Chr02: 36292913-36296870 Phaseolus vulgaris
Phvul.002G198100 0.5kb upstream 0.5kb upstream 500 false Chr02: 36296371-36296870 Phaseolus vulgaris
Phvul.002G198100 0.5kb downstream 0.5kb downstream 3958 true Chr02: 36292413-36296370 Phaseolus vulgaris
Phvul.002G198100 0.5kb downstream 0.5kb downstream 500 false Chr02: 36292413-36292912 Phaseolus vulgaris
Phvul.002G198100 1.0kb upstream 1.0kb upstream 4458 true Chr02: 36292913-36297370 Phaseolus vulgaris
Phvul.002G198100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 36296371-36297370 Phaseolus vulgaris
Phvul.002G198100 1.0kb downstream 1.0kb downstream 4458 true Chr02: 36291913-36296370 Phaseolus vulgaris
Phvul.002G198100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 36291913-36292912 Phaseolus vulgaris
Phvul.002G198100 2.0kb upstream 2.0kb upstream 5458 true Chr02: 36292913-36298370 Phaseolus vulgaris
Phvul.002G198100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 36296371-36298370 Phaseolus vulgaris
Phvul.002G198100 2.0kb downstream 2.0kb downstream 5458 true Chr02: 36290913-36296370 Phaseolus vulgaris
Phvul.002G198100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 36290913-36292912 Phaseolus vulgaris
Phvul.002G198100 5.0kb upstream 5.0kb upstream 8458 true Chr02: 36292913-36301370 Phaseolus vulgaris
Phvul.002G198100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 36296371-36301370 Phaseolus vulgaris
Phvul.002G198100 5.0kb downstream 5.0kb downstream 8458 true Chr02: 36287913-36296370 Phaseolus vulgaris
Phvul.002G198100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 36287913-36292912 Phaseolus vulgaris
Phvul.002G198100 10.0kb upstream 10.0kb upstream 13458 true Chr02: 36292913-36306370 Phaseolus vulgaris
Phvul.002G198100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 36296371-36306370 Phaseolus vulgaris
Phvul.002G198100 10.0kb downstream 10.0kb downstream 13458 true Chr02: 36282913-36296370 Phaseolus vulgaris
Phvul.002G198100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 36282913-36292912 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314145 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.0901 0.0 3.9045    
cufflinks 0.948706 0.0 3.45702    
cufflinks 1.11113 0.0 3.97522    
cufflinks 0.267965 0.0 1.09353 Low Low
cufflinks 1.36229 0.0 4.83485    
cufflinks 0.318787 0.0 1.26647 Low Low
cufflinks 1.27685 0.0 4.526    
cufflinks 1.15817 0.0 4.10081    
cufflinks 1.21966 0.0 4.36826    
cufflinks 1.85993 0.0 6.33624   High
cufflinks 0.81593 0.0 3.03245    

0 Strain