Gene : Phvul.002G198300 P. vulgaris v2.1
Defline:  (1 of 2) K00013 - histidinol dehydrogenase (hisD) Genomic Order:  1961
Name:  ? Phvul.002G198300 Secondary Identifier:  ? PAC:37177890
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris HISTSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G198300 0.5kb upstream 0.5kb upstream 9765 true Chr02: 36309900-36319664 Phaseolus vulgaris
Phvul.002G198300 0.5kb upstream 0.5kb upstream 500 false Chr02: 36309900-36310399 Phaseolus vulgaris
Phvul.002G198300 0.5kb downstream 0.5kb downstream 9765 true Chr02: 36310400-36320164 Phaseolus vulgaris
Phvul.002G198300 0.5kb downstream 0.5kb downstream 500 false Chr02: 36319665-36320164 Phaseolus vulgaris
Phvul.002G198300 1.0kb upstream 1.0kb upstream 10265 true Chr02: 36309400-36319664 Phaseolus vulgaris
Phvul.002G198300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 36309400-36310399 Phaseolus vulgaris
Phvul.002G198300 1.0kb downstream 1.0kb downstream 10265 true Chr02: 36310400-36320664 Phaseolus vulgaris
Phvul.002G198300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 36319665-36320664 Phaseolus vulgaris
Phvul.002G198300 2.0kb upstream 2.0kb upstream 11265 true Chr02: 36308400-36319664 Phaseolus vulgaris
Phvul.002G198300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 36308400-36310399 Phaseolus vulgaris
Phvul.002G198300 2.0kb downstream 2.0kb downstream 11265 true Chr02: 36310400-36321664 Phaseolus vulgaris
Phvul.002G198300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 36319665-36321664 Phaseolus vulgaris
Phvul.002G198300 5.0kb upstream 5.0kb upstream 14265 true Chr02: 36305400-36319664 Phaseolus vulgaris
Phvul.002G198300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 36305400-36310399 Phaseolus vulgaris
Phvul.002G198300 5.0kb downstream 5.0kb downstream 14265 true Chr02: 36310400-36324664 Phaseolus vulgaris
Phvul.002G198300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 36319665-36324664 Phaseolus vulgaris
Phvul.002G198300 10.0kb upstream 10.0kb upstream 19265 true Chr02: 36300400-36319664 Phaseolus vulgaris
Phvul.002G198300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 36300400-36310399 Phaseolus vulgaris
Phvul.002G198300 10.0kb downstream 10.0kb downstream 19265 true Chr02: 36310400-36329664 Phaseolus vulgaris
Phvul.002G198300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 36319665-36329664 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253909 5265 Fabidae View MSA
124061664 5270 Rosid View MSA
123738837 5271 Pentapetalae View MSA
122785994 5272 Eudicot View MSA
122046994 5273 Angiosperm View MSA
121351553 5274 Embryophyte View MSA
123424167 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.35108 0.0 20.1147   Low
cufflinks 9.59925 0.0 28.3711    
cufflinks 8.50241 0.0 25.4166    
cufflinks 8.89471 0.0 26.8713    
cufflinks 7.12206 0.0 22.3303    
cufflinks 7.53733 0.0 23.095    
cufflinks 7.47274 0.0 22.9262    
cufflinks 8.91159 0.0 26.4022    
cufflinks 6.7285 0.0 21.1024   Low
cufflinks 13.1367 0.0 37.2375   High
cufflinks 7.98199 0.0 24.2818    

0 Strain