Gene : Phvul.002G189400 P. vulgaris v2.1
Defline:  (1 of 3) PF13229 - Right handed beta helix region (Beta_helix) Genomic Order:  1873
Name:  ? Phvul.002G189400 Secondary Identifier:  ? PAC:37175553
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G189400 0.5kb upstream 0.5kb upstream 3375 true Chr02: 35244486-35247860 Phaseolus vulgaris
Phvul.002G189400 0.5kb upstream 0.5kb upstream 500 false Chr02: 35247361-35247860 Phaseolus vulgaris
Phvul.002G189400 0.5kb downstream 0.5kb downstream 3375 true Chr02: 35243986-35247360 Phaseolus vulgaris
Phvul.002G189400 0.5kb downstream 0.5kb downstream 500 false Chr02: 35243986-35244485 Phaseolus vulgaris
Phvul.002G189400 1.0kb upstream 1.0kb upstream 3875 true Chr02: 35244486-35248360 Phaseolus vulgaris
Phvul.002G189400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 35247361-35248360 Phaseolus vulgaris
Phvul.002G189400 1.0kb downstream 1.0kb downstream 3875 true Chr02: 35243486-35247360 Phaseolus vulgaris
Phvul.002G189400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 35243486-35244485 Phaseolus vulgaris
Phvul.002G189400 2.0kb upstream 2.0kb upstream 4875 true Chr02: 35244486-35249360 Phaseolus vulgaris
Phvul.002G189400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 35247361-35249360 Phaseolus vulgaris
Phvul.002G189400 2.0kb downstream 2.0kb downstream 4875 true Chr02: 35242486-35247360 Phaseolus vulgaris
Phvul.002G189400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 35242486-35244485 Phaseolus vulgaris
Phvul.002G189400 5.0kb upstream 5.0kb upstream 7875 true Chr02: 35244486-35252360 Phaseolus vulgaris
Phvul.002G189400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 35247361-35252360 Phaseolus vulgaris
Phvul.002G189400 5.0kb downstream 5.0kb downstream 7875 true Chr02: 35239486-35247360 Phaseolus vulgaris
Phvul.002G189400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 35239486-35244485 Phaseolus vulgaris
Phvul.002G189400 10.0kb upstream 10.0kb upstream 12875 true Chr02: 35244486-35257360 Phaseolus vulgaris
Phvul.002G189400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 35247361-35257360 Phaseolus vulgaris
Phvul.002G189400 10.0kb downstream 10.0kb downstream 12875 true Chr02: 35234486-35247360 Phaseolus vulgaris
Phvul.002G189400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 35234486-35244485 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312563 5265 Fabidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.513672 0.0 1.87663    
cufflinks 1.06503 0.0 3.61692    
cufflinks 3.34426 0.0 9.93488    
cufflinks 1.03185 0.0 3.53741    
cufflinks 7.44741 0.0 20.559    
cufflinks 6.14543 0.0 17.1722    
cufflinks 6.15827 0.0 17.1735    
cufflinks 38.7885 0.0 101.432 High High
cufflinks 0.338292 0.0 1.27962 Low Low
cufflinks 0.0850139 0.0 0.360414 Low Low
cufflinks 4.32117 0.0 12.578    

0 Strain