Gene : Phvul.002G181400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  1795
Name:  ? Phvul.002G181400 Secondary Identifier:  ? PAC:37175653
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5120 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5910 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G181400 0.5kb upstream 0.5kb upstream 2811 true Chr02: 34132677-34135487 Phaseolus vulgaris
Phvul.002G181400 0.5kb upstream 0.5kb upstream 500 false Chr02: 34132677-34133176 Phaseolus vulgaris
Phvul.002G181400 0.5kb downstream 0.5kb downstream 2811 true Chr02: 34133177-34135987 Phaseolus vulgaris
Phvul.002G181400 0.5kb downstream 0.5kb downstream 500 false Chr02: 34135488-34135987 Phaseolus vulgaris
Phvul.002G181400 1.0kb upstream 1.0kb upstream 3311 true Chr02: 34132177-34135487 Phaseolus vulgaris
Phvul.002G181400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 34132177-34133176 Phaseolus vulgaris
Phvul.002G181400 1.0kb downstream 1.0kb downstream 3311 true Chr02: 34133177-34136487 Phaseolus vulgaris
Phvul.002G181400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 34135488-34136487 Phaseolus vulgaris
Phvul.002G181400 2.0kb upstream 2.0kb upstream 4311 true Chr02: 34131177-34135487 Phaseolus vulgaris
Phvul.002G181400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 34131177-34133176 Phaseolus vulgaris
Phvul.002G181400 2.0kb downstream 2.0kb downstream 4311 true Chr02: 34133177-34137487 Phaseolus vulgaris
Phvul.002G181400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 34135488-34137487 Phaseolus vulgaris
Phvul.002G181400 5.0kb upstream 5.0kb upstream 7311 true Chr02: 34128177-34135487 Phaseolus vulgaris
Phvul.002G181400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 34128177-34133176 Phaseolus vulgaris
Phvul.002G181400 5.0kb downstream 5.0kb downstream 7311 true Chr02: 34133177-34140487 Phaseolus vulgaris
Phvul.002G181400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 34135488-34140487 Phaseolus vulgaris
Phvul.002G181400 10.0kb upstream 10.0kb upstream 12311 true Chr02: 34123177-34135487 Phaseolus vulgaris
Phvul.002G181400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 34123177-34133176 Phaseolus vulgaris
Phvul.002G181400 10.0kb downstream 10.0kb downstream 12311 true Chr02: 34133177-34145487 Phaseolus vulgaris
Phvul.002G181400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 34135488-34145487 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302635 5265 Fabidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 73.2437 0.0 197.414 High High
cufflinks 34.2933 0.0 88.7447 High  
cufflinks 75.2254 0.0 203.158 High High
cufflinks 56.1506 0.0 147.737 High  
cufflinks 25.7373 0.0 66.5746    
cufflinks 43.3315 0.0 112.859 High  
cufflinks 19.592 0.0 50.9294   Low
cufflinks 18.2324 0.0 47.5778   Low
cufflinks 26.59 0.0 68.7566    
cufflinks 24.2292 0.0 62.7512    
cufflinks 22.6353 0.0 58.6808    

0 Strain