Gene : Phvul.002G183000 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31448:SF3 - IFA-BINDING PROTEIN Genomic Order:  1810
Name:  ? Phvul.002G183000 Secondary Identifier:  ? PAC:37175872
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G183000 0.5kb upstream 0.5kb upstream 4578 true Chr02: 34354700-34359277 Phaseolus vulgaris
Phvul.002G183000 0.5kb upstream 0.5kb upstream 500 false Chr02: 34358778-34359277 Phaseolus vulgaris
Phvul.002G183000 0.5kb downstream 0.5kb downstream 4578 true Chr02: 34354200-34358777 Phaseolus vulgaris
Phvul.002G183000 0.5kb downstream 0.5kb downstream 500 false Chr02: 34354200-34354699 Phaseolus vulgaris
Phvul.002G183000 1.0kb upstream 1.0kb upstream 5078 true Chr02: 34354700-34359777 Phaseolus vulgaris
Phvul.002G183000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 34358778-34359777 Phaseolus vulgaris
Phvul.002G183000 1.0kb downstream 1.0kb downstream 5078 true Chr02: 34353700-34358777 Phaseolus vulgaris
Phvul.002G183000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 34353700-34354699 Phaseolus vulgaris
Phvul.002G183000 2.0kb upstream 2.0kb upstream 6078 true Chr02: 34354700-34360777 Phaseolus vulgaris
Phvul.002G183000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 34358778-34360777 Phaseolus vulgaris
Phvul.002G183000 2.0kb downstream 2.0kb downstream 6078 true Chr02: 34352700-34358777 Phaseolus vulgaris
Phvul.002G183000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 34352700-34354699 Phaseolus vulgaris
Phvul.002G183000 5.0kb upstream 5.0kb upstream 9078 true Chr02: 34354700-34363777 Phaseolus vulgaris
Phvul.002G183000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 34358778-34363777 Phaseolus vulgaris
Phvul.002G183000 5.0kb downstream 5.0kb downstream 9078 true Chr02: 34349700-34358777 Phaseolus vulgaris
Phvul.002G183000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 34349700-34354699 Phaseolus vulgaris
Phvul.002G183000 10.0kb upstream 10.0kb upstream 14078 true Chr02: 34354700-34368777 Phaseolus vulgaris
Phvul.002G183000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 34358778-34368777 Phaseolus vulgaris
Phvul.002G183000 10.0kb downstream 10.0kb downstream 14078 true Chr02: 34344700-34358777 Phaseolus vulgaris
Phvul.002G183000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 34344700-34354699 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313978 5265 Fabidae View MSA
124070207 5270 Rosid View MSA
123753700 5271 Pentapetalae View MSA
122788125 5272 Eudicot View MSA
122050916 5273 Angiosperm View MSA
121351297 5274 Embryophyte View MSA
123382108 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.18889 0.0 18.6297   Low
cufflinks 8.38719 0.0 21.6899   Low
cufflinks 16.9786 0.0 44.7167    
cufflinks 9.26811 0.0 23.9744    
cufflinks 17.3463 0.0 45.4182    
cufflinks 15.2287 0.0 39.832    
cufflinks 12.3349 0.0 32.0263    
cufflinks 10.6955 0.0 27.6982    
cufflinks 19.7388 0.0 52.4653   High
cufflinks 23.7838 0.0 63.9061   High
cufflinks 15.535 0.0 40.5442    

0 Strain