Gene : Phvul.002G302000 P. vulgaris v2.1
Defline:  (1 of 4) PF14604 - Variant SH3 domain (SH3_9) Genomic Order:  3009
Name:  ? Phvul.002G302000 Secondary Identifier:  ? PAC:37177026
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G302000 0.5kb upstream 0.5kb upstream 19738 true Chr02: 47002107-47021844 Phaseolus vulgaris
Phvul.002G302000 0.5kb upstream 0.5kb upstream 500 false Chr02: 47002107-47002606 Phaseolus vulgaris
Phvul.002G302000 0.5kb downstream 0.5kb downstream 19738 true Chr02: 47002607-47022344 Phaseolus vulgaris
Phvul.002G302000 0.5kb downstream 0.5kb downstream 500 false Chr02: 47021845-47022344 Phaseolus vulgaris
Phvul.002G302000 1.0kb upstream 1.0kb upstream 20238 true Chr02: 47001607-47021844 Phaseolus vulgaris
Phvul.002G302000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47001607-47002606 Phaseolus vulgaris
Phvul.002G302000 1.0kb downstream 1.0kb downstream 20238 true Chr02: 47002607-47022844 Phaseolus vulgaris
Phvul.002G302000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47021845-47022844 Phaseolus vulgaris
Phvul.002G302000 2.0kb upstream 2.0kb upstream 21238 true Chr02: 47000607-47021844 Phaseolus vulgaris
Phvul.002G302000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47000607-47002606 Phaseolus vulgaris
Phvul.002G302000 2.0kb downstream 2.0kb downstream 21238 true Chr02: 47002607-47023844 Phaseolus vulgaris
Phvul.002G302000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47021845-47023844 Phaseolus vulgaris
Phvul.002G302000 5.0kb upstream 5.0kb upstream 24238 true Chr02: 46997607-47021844 Phaseolus vulgaris
Phvul.002G302000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 46997607-47002606 Phaseolus vulgaris
Phvul.002G302000 5.0kb downstream 5.0kb downstream 24238 true Chr02: 47002607-47026844 Phaseolus vulgaris
Phvul.002G302000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47021845-47026844 Phaseolus vulgaris
Phvul.002G302000 10.0kb upstream 10.0kb upstream 29238 true Chr02: 46992607-47021844 Phaseolus vulgaris
Phvul.002G302000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 46992607-47002606 Phaseolus vulgaris
Phvul.002G302000 10.0kb downstream 10.0kb downstream 29238 true Chr02: 47002607-47031844 Phaseolus vulgaris
Phvul.002G302000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47021845-47031844 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309070 5265 Fabidae View MSA
124068619 5270 Rosid View MSA
123739982 5271 Pentapetalae View MSA
122785695 5272 Eudicot View MSA
122044130 5273 Angiosperm View MSA
121348962 5274 Embryophyte View MSA
123428583 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.51218 0.0 16.974   Low
cufflinks 20.1636 0.0 53.2628    
cufflinks 17.1694 0.0 44.9856    
cufflinks 11.7695 0.0 30.4348   Low
cufflinks 21.526 0.0 56.9899    
cufflinks 19.4664 0.0 51.3289    
cufflinks 18.9694 0.0 49.8996    
cufflinks 24.7927 0.0 66.623    
cufflinks 21.7164 0.0 57.5737    
cufflinks 36.1433 0.0 100.442 High High
cufflinks 22.1431 0.0 58.7309    

0 Strain