Gene : Phvul.002G305900 P. vulgaris v2.1
Defline:  (1 of 3) K12194 - charged multivesicular body protein 4 (CHMP4, SNF7, VPS32) Genomic Order:  3048
Name:  ? Phvul.002G305900 Secondary Identifier:  ? PAC:37176604
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G305900 0.5kb upstream 0.5kb upstream 5062 true Chr02: 47379308-47384369 Phaseolus vulgaris
Phvul.002G305900 0.5kb upstream 0.5kb upstream 500 false Chr02: 47379308-47379807 Phaseolus vulgaris
Phvul.002G305900 0.5kb downstream 0.5kb downstream 5062 true Chr02: 47379808-47384869 Phaseolus vulgaris
Phvul.002G305900 0.5kb downstream 0.5kb downstream 500 false Chr02: 47384370-47384869 Phaseolus vulgaris
Phvul.002G305900 1.0kb upstream 1.0kb upstream 5562 true Chr02: 47378808-47384369 Phaseolus vulgaris
Phvul.002G305900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47378808-47379807 Phaseolus vulgaris
Phvul.002G305900 1.0kb downstream 1.0kb downstream 5562 true Chr02: 47379808-47385369 Phaseolus vulgaris
Phvul.002G305900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47384370-47385369 Phaseolus vulgaris
Phvul.002G305900 2.0kb upstream 2.0kb upstream 6562 true Chr02: 47377808-47384369 Phaseolus vulgaris
Phvul.002G305900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47377808-47379807 Phaseolus vulgaris
Phvul.002G305900 2.0kb downstream 2.0kb downstream 6562 true Chr02: 47379808-47386369 Phaseolus vulgaris
Phvul.002G305900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47384370-47386369 Phaseolus vulgaris
Phvul.002G305900 5.0kb upstream 5.0kb upstream 9562 true Chr02: 47374808-47384369 Phaseolus vulgaris
Phvul.002G305900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 47374808-47379807 Phaseolus vulgaris
Phvul.002G305900 5.0kb downstream 5.0kb downstream 9562 true Chr02: 47379808-47389369 Phaseolus vulgaris
Phvul.002G305900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47384370-47389369 Phaseolus vulgaris
Phvul.002G305900 10.0kb upstream 10.0kb upstream 14562 true Chr02: 47369808-47384369 Phaseolus vulgaris
Phvul.002G305900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 47369808-47379807 Phaseolus vulgaris
Phvul.002G305900 10.0kb downstream 10.0kb downstream 14562 true Chr02: 47379808-47394369 Phaseolus vulgaris
Phvul.002G305900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47384370-47394369 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309390 5265 Fabidae View MSA
124071196 5270 Rosid View MSA
123751251 5271 Pentapetalae View MSA
122786571 5272 Eudicot View MSA
122048548 5273 Angiosperm View MSA
121350329 5274 Embryophyte View MSA
123426511 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.2097 0.0 194.634 High High
cufflinks 26.5006 0.0 85.8079    
cufflinks 37.6994 0.0 118.826    
cufflinks 48.8363 0.0 154.732 High High
cufflinks 38.8916 0.0 122.722 High  
cufflinks 23.6689 0.0 76.4838   Low
cufflinks 31.3351 0.0 100.116 High  
cufflinks 24.7018 0.0 78.7651   Low
cufflinks 35.9145 0.0 113.506 High  
cufflinks 33.0513 0.0 104.412    
cufflinks 41.3873 0.0 115.342 High  

0 Strain