Gene : Phvul.002G308900 P. vulgaris v2.1

Defline:  (1 of 3) PTHR21068:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIL23-RELATED Genomic Order:  3078
Name:  ? Phvul.002G308900 Secondary Identifier:  ? PAC:37178579

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G308900 0.5kb upstream 0.5kb upstream 3025 true Chr02: 47647801-47650825 Phaseolus vulgaris
Phvul.002G308900 0.5kb upstream 0.5kb upstream 500 false Chr02: 47647801-47648300 Phaseolus vulgaris
Phvul.002G308900 0.5kb downstream 0.5kb downstream 3025 true Chr02: 47648301-47651325 Phaseolus vulgaris
Phvul.002G308900 0.5kb downstream 0.5kb downstream 500 false Chr02: 47650826-47651325 Phaseolus vulgaris
Phvul.002G308900 1.0kb upstream 1.0kb upstream 3525 true Chr02: 47647301-47650825 Phaseolus vulgaris
Phvul.002G308900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47647301-47648300 Phaseolus vulgaris
Phvul.002G308900 1.0kb downstream 1.0kb downstream 3525 true Chr02: 47648301-47651825 Phaseolus vulgaris
Phvul.002G308900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47650826-47651825 Phaseolus vulgaris
Phvul.002G308900 2.0kb upstream 2.0kb upstream 4525 true Chr02: 47646301-47650825 Phaseolus vulgaris
Phvul.002G308900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47646301-47648300 Phaseolus vulgaris
Phvul.002G308900 2.0kb downstream 2.0kb downstream 4525 true Chr02: 47648301-47652825 Phaseolus vulgaris
Phvul.002G308900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47650826-47652825 Phaseolus vulgaris
Phvul.002G308900 5.0kb upstream 5.0kb upstream 7525 true Chr02: 47643301-47650825 Phaseolus vulgaris
Phvul.002G308900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 47643301-47648300 Phaseolus vulgaris
Phvul.002G308900 5.0kb downstream 5.0kb downstream 7525 true Chr02: 47648301-47655825 Phaseolus vulgaris
Phvul.002G308900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47650826-47655825 Phaseolus vulgaris
Phvul.002G308900 10.0kb upstream 10.0kb upstream 12525 true Chr02: 47638301-47650825 Phaseolus vulgaris
Phvul.002G308900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 47638301-47648300 Phaseolus vulgaris
Phvul.002G308900 10.0kb downstream 10.0kb downstream 12525 true Chr02: 47648301-47660825 Phaseolus vulgaris
Phvul.002G308900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47650826-47660825 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026413 5273 Angiosperm View MSA
122309272 5265 Fabidae View MSA
124068163 5270 Rosid View MSA
123740247 5271 Pentapetalae View MSA
122787553 5272 Eudicot View MSA
121296318 5274 Embryophyte View MSA
123334500 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.94991 0.0 6.33469    
cufflinks 2.29094 0.0 7.30727    
cufflinks 3.08706 0.0 9.48627    
cufflinks 4.16525 0.0 12.5218    
cufflinks 5.6614 0.0 16.4284   High
cufflinks 1.26779 0.0 4.32092   Low
cufflinks 3.50424 0.0 10.6345    
cufflinks 2.89939 0.0 8.97198    
cufflinks 3.35585 0.0 10.2627    
cufflinks 1.36134 0.0 4.6239   Low
cufflinks 6.83418 0.0 19.3903   High

0 Strain