Gene : Phvul.002G300000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13215:SF6 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP Genomic Order:  2986
Name:  ? Phvul.002G300000 Secondary Identifier:  ? PAC:37178640
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G300000 0.5kb upstream 0.5kb upstream 2659 true Chr02: 46814920-46817578 Phaseolus vulgaris
Phvul.002G300000 0.5kb upstream 0.5kb upstream 500 false Chr02: 46814920-46815419 Phaseolus vulgaris
Phvul.002G300000 0.5kb downstream 0.5kb downstream 2659 true Chr02: 46815420-46818078 Phaseolus vulgaris
Phvul.002G300000 0.5kb downstream 0.5kb downstream 500 false Chr02: 46817579-46818078 Phaseolus vulgaris
Phvul.002G300000 1.0kb upstream 1.0kb upstream 3159 true Chr02: 46814420-46817578 Phaseolus vulgaris
Phvul.002G300000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 46814420-46815419 Phaseolus vulgaris
Phvul.002G300000 1.0kb downstream 1.0kb downstream 3159 true Chr02: 46815420-46818578 Phaseolus vulgaris
Phvul.002G300000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 46817579-46818578 Phaseolus vulgaris
Phvul.002G300000 2.0kb upstream 2.0kb upstream 4159 true Chr02: 46813420-46817578 Phaseolus vulgaris
Phvul.002G300000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 46813420-46815419 Phaseolus vulgaris
Phvul.002G300000 2.0kb downstream 2.0kb downstream 4159 true Chr02: 46815420-46819578 Phaseolus vulgaris
Phvul.002G300000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 46817579-46819578 Phaseolus vulgaris
Phvul.002G300000 5.0kb upstream 5.0kb upstream 7159 true Chr02: 46810420-46817578 Phaseolus vulgaris
Phvul.002G300000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 46810420-46815419 Phaseolus vulgaris
Phvul.002G300000 5.0kb downstream 5.0kb downstream 7159 true Chr02: 46815420-46822578 Phaseolus vulgaris
Phvul.002G300000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 46817579-46822578 Phaseolus vulgaris
Phvul.002G300000 10.0kb upstream 10.0kb upstream 12159 true Chr02: 46805420-46817578 Phaseolus vulgaris
Phvul.002G300000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 46805420-46815419 Phaseolus vulgaris
Phvul.002G300000 10.0kb downstream 10.0kb downstream 12159 true Chr02: 46815420-46827578 Phaseolus vulgaris
Phvul.002G300000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 46817579-46827578 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308178 5265 Fabidae View MSA
124066656 5270 Rosid View MSA
123749288 5271 Pentapetalae View MSA
122790546 5272 Eudicot View MSA
122043186 5273 Angiosperm View MSA
121348005 5274 Embryophyte View MSA
123427584 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.0851 0.0 66.5489   High
cufflinks 23.3471 0.0 62.3144    
cufflinks 11.1091 0.0 31.673   Low
cufflinks 21.4269 0.0 57.7439    
cufflinks 14.7471 0.0 41.1942    
cufflinks 11.6297 0.0 32.9786   Low
cufflinks 15.2953 0.0 42.0755    
cufflinks 21.6647 0.0 57.8613    
cufflinks 13.0183 0.0 36.3445    
cufflinks 24.0583 0.0 64.2545    
cufflinks 22.0481 0.0 59.2239    

0 Strain