Gene : Phvul.002G290300 P. vulgaris v2.1
Defline:  (1 of 1) 6.3.2.37 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--D-lysine ligase / UDP-MurNAc-L-Ala-D-Glu:D-Lys ligase Genomic Order:  2887
Name:  ? Phvul.002G290300 Secondary Identifier:  ? PAC:37175789
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G290300 0.5kb upstream 0.5kb upstream 4796 true Chr02: 45885895-45890690 Phaseolus vulgaris
Phvul.002G290300 0.5kb upstream 0.5kb upstream 500 false Chr02: 45885895-45886394 Phaseolus vulgaris
Phvul.002G290300 0.5kb downstream 0.5kb downstream 4796 true Chr02: 45886395-45891190 Phaseolus vulgaris
Phvul.002G290300 0.5kb downstream 0.5kb downstream 500 false Chr02: 45890691-45891190 Phaseolus vulgaris
Phvul.002G290300 1.0kb upstream 1.0kb upstream 5296 true Chr02: 45885395-45890690 Phaseolus vulgaris
Phvul.002G290300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 45885395-45886394 Phaseolus vulgaris
Phvul.002G290300 1.0kb downstream 1.0kb downstream 5296 true Chr02: 45886395-45891690 Phaseolus vulgaris
Phvul.002G290300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 45890691-45891690 Phaseolus vulgaris
Phvul.002G290300 2.0kb upstream 2.0kb upstream 6296 true Chr02: 45884395-45890690 Phaseolus vulgaris
Phvul.002G290300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 45884395-45886394 Phaseolus vulgaris
Phvul.002G290300 2.0kb downstream 2.0kb downstream 6296 true Chr02: 45886395-45892690 Phaseolus vulgaris
Phvul.002G290300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 45890691-45892690 Phaseolus vulgaris
Phvul.002G290300 5.0kb upstream 5.0kb upstream 9296 true Chr02: 45881395-45890690 Phaseolus vulgaris
Phvul.002G290300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 45881395-45886394 Phaseolus vulgaris
Phvul.002G290300 5.0kb downstream 5.0kb downstream 9296 true Chr02: 45886395-45895690 Phaseolus vulgaris
Phvul.002G290300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 45890691-45895690 Phaseolus vulgaris
Phvul.002G290300 10.0kb upstream 10.0kb upstream 14296 true Chr02: 45876395-45890690 Phaseolus vulgaris
Phvul.002G290300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 45876395-45886394 Phaseolus vulgaris
Phvul.002G290300 10.0kb downstream 10.0kb downstream 14296 true Chr02: 45886395-45900690 Phaseolus vulgaris
Phvul.002G290300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 45890691-45900690 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307109 5265 Fabidae View MSA
124060443 5270 Rosid View MSA
123746707 5271 Pentapetalae View MSA
122792589 5272 Eudicot View MSA
122042880 5273 Angiosperm View MSA
121344951 5274 Embryophyte View MSA
123428207 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.66445 0.0 22.5488    
cufflinks 20.9898 0.0 54.7614    
cufflinks 21.9335 0.0 57.2445   High
cufflinks 11.6078 0.0 30.0524    
cufflinks 16.064 0.0 41.584    
cufflinks 27.6488 0.0 73.2474   High
cufflinks 8.42797 0.0 21.9586   Low
cufflinks 8.97758 0.0 23.3594    
cufflinks 7.1621 0.0 18.8356   Low
cufflinks 15.4757 0.0 40.0469    
cufflinks 15.1204 0.0 39.1132    

0 Strain