Gene : Phvul.002G280500 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2786
Name:  ? Phvul.002G280500 Secondary Identifier:  ? PAC:37174860
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G280500 0.5kb upstream 0.5kb upstream 2689 true Chr02: 44972892-44975580 Phaseolus vulgaris
Phvul.002G280500 0.5kb upstream 0.5kb upstream 500 false Chr02: 44975081-44975580 Phaseolus vulgaris
Phvul.002G280500 0.5kb downstream 0.5kb downstream 2689 true Chr02: 44972392-44975080 Phaseolus vulgaris
Phvul.002G280500 0.5kb downstream 0.5kb downstream 500 false Chr02: 44972392-44972891 Phaseolus vulgaris
Phvul.002G280500 1.0kb upstream 1.0kb upstream 3189 true Chr02: 44972892-44976080 Phaseolus vulgaris
Phvul.002G280500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 44975081-44976080 Phaseolus vulgaris
Phvul.002G280500 1.0kb downstream 1.0kb downstream 3189 true Chr02: 44971892-44975080 Phaseolus vulgaris
Phvul.002G280500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 44971892-44972891 Phaseolus vulgaris
Phvul.002G280500 2.0kb upstream 2.0kb upstream 4189 true Chr02: 44972892-44977080 Phaseolus vulgaris
Phvul.002G280500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 44975081-44977080 Phaseolus vulgaris
Phvul.002G280500 2.0kb downstream 2.0kb downstream 4189 true Chr02: 44970892-44975080 Phaseolus vulgaris
Phvul.002G280500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 44970892-44972891 Phaseolus vulgaris
Phvul.002G280500 5.0kb upstream 5.0kb upstream 7189 true Chr02: 44972892-44980080 Phaseolus vulgaris
Phvul.002G280500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 44975081-44980080 Phaseolus vulgaris
Phvul.002G280500 5.0kb downstream 5.0kb downstream 7189 true Chr02: 44967892-44975080 Phaseolus vulgaris
Phvul.002G280500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 44967892-44972891 Phaseolus vulgaris
Phvul.002G280500 10.0kb upstream 10.0kb upstream 12189 true Chr02: 44972892-44985080 Phaseolus vulgaris
Phvul.002G280500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 44975081-44985080 Phaseolus vulgaris
Phvul.002G280500 10.0kb downstream 10.0kb downstream 12189 true Chr02: 44962892-44975080 Phaseolus vulgaris
Phvul.002G280500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 44962892-44972891 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303393 5265 Fabidae View MSA
124050196 5270 Rosid View MSA
123737959 5271 Pentapetalae View MSA
122788156 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.48502 0.0 4.73444    
cufflinks 2.80884 0.0 8.36538   High
cufflinks 0.589216 0.0 2.0986   Low
cufflinks 2.3604 0.0 7.19858    
cufflinks 1.40082 0.0 4.51686    
cufflinks 1.29409 0.0 4.21448    
cufflinks 1.91865 0.0 5.9361    
cufflinks 1.72708 0.0 5.42845    
cufflinks 2.64602 0.0 7.92784   High
cufflinks 1.73331 0.0 5.45898    
cufflinks 1.61055 0.0 5.10804    

0 Strain