Gene : Phvul.002G281100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  2792
Name:  ? Phvul.002G281100 Secondary Identifier:  ? PAC:37175022
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5980 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G281100 0.5kb upstream 0.5kb upstream 3855 true Chr02: 45002905-45006759 Phaseolus vulgaris
Phvul.002G281100 0.5kb upstream 0.5kb upstream 500 false Chr02: 45006260-45006759 Phaseolus vulgaris
Phvul.002G281100 0.5kb downstream 0.5kb downstream 3855 true Chr02: 45002405-45006259 Phaseolus vulgaris
Phvul.002G281100 0.5kb downstream 0.5kb downstream 500 false Chr02: 45002405-45002904 Phaseolus vulgaris
Phvul.002G281100 1.0kb upstream 1.0kb upstream 4355 true Chr02: 45002905-45007259 Phaseolus vulgaris
Phvul.002G281100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 45006260-45007259 Phaseolus vulgaris
Phvul.002G281100 1.0kb downstream 1.0kb downstream 4355 true Chr02: 45001905-45006259 Phaseolus vulgaris
Phvul.002G281100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 45001905-45002904 Phaseolus vulgaris
Phvul.002G281100 2.0kb upstream 2.0kb upstream 5355 true Chr02: 45002905-45008259 Phaseolus vulgaris
Phvul.002G281100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 45006260-45008259 Phaseolus vulgaris
Phvul.002G281100 2.0kb downstream 2.0kb downstream 5355 true Chr02: 45000905-45006259 Phaseolus vulgaris
Phvul.002G281100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 45000905-45002904 Phaseolus vulgaris
Phvul.002G281100 5.0kb upstream 5.0kb upstream 8355 true Chr02: 45002905-45011259 Phaseolus vulgaris
Phvul.002G281100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 45006260-45011259 Phaseolus vulgaris
Phvul.002G281100 5.0kb downstream 5.0kb downstream 8355 true Chr02: 44997905-45006259 Phaseolus vulgaris
Phvul.002G281100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 44997905-45002904 Phaseolus vulgaris
Phvul.002G281100 10.0kb upstream 10.0kb upstream 13355 true Chr02: 45002905-45016259 Phaseolus vulgaris
Phvul.002G281100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 45006260-45016259 Phaseolus vulgaris
Phvul.002G281100 10.0kb downstream 10.0kb downstream 13355 true Chr02: 44992905-45006259 Phaseolus vulgaris
Phvul.002G281100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 44992905-45002904 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301284 5265 Fabidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.48312 0.0 10.4088   Low
cufflinks 3.42143 0.0 10.2814   Low
cufflinks 3.49295 0.0 10.4094   Low
cufflinks 7.57175 0.0 20.973    
cufflinks 36.8752 0.0 95.7213 High High
cufflinks 7.03948 0.0 19.582    
cufflinks 19.2549 0.0 50.009    
cufflinks 5.922 0.0 16.7278    
cufflinks 14.1582 0.0 37.3256    
cufflinks 9.73028 0.0 26.4061    
cufflinks 54.9733 0.0 145.111 High High

0 Strain