Gene : Phvul.002G267600 P. vulgaris v2.1
Defline:  (1 of 1) K11851 - ubiquitin carboxyl-terminal hydrolase 30 [EC:3.4.19.12] (USP30) Genomic Order:  2651
Name:  ? Phvul.002G267600 Secondary Identifier:  ? PAC:37177123
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G267600 0.5kb upstream 0.5kb upstream 4938 true Chr02: 43855188-43860125 Phaseolus vulgaris
Phvul.002G267600 0.5kb upstream 0.5kb upstream 500 false Chr02: 43859626-43860125 Phaseolus vulgaris
Phvul.002G267600 0.5kb downstream 0.5kb downstream 4938 true Chr02: 43854688-43859625 Phaseolus vulgaris
Phvul.002G267600 0.5kb downstream 0.5kb downstream 500 false Chr02: 43854688-43855187 Phaseolus vulgaris
Phvul.002G267600 1.0kb upstream 1.0kb upstream 5438 true Chr02: 43855188-43860625 Phaseolus vulgaris
Phvul.002G267600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 43859626-43860625 Phaseolus vulgaris
Phvul.002G267600 1.0kb downstream 1.0kb downstream 5438 true Chr02: 43854188-43859625 Phaseolus vulgaris
Phvul.002G267600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 43854188-43855187 Phaseolus vulgaris
Phvul.002G267600 2.0kb upstream 2.0kb upstream 6438 true Chr02: 43855188-43861625 Phaseolus vulgaris
Phvul.002G267600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 43859626-43861625 Phaseolus vulgaris
Phvul.002G267600 2.0kb downstream 2.0kb downstream 6438 true Chr02: 43853188-43859625 Phaseolus vulgaris
Phvul.002G267600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 43853188-43855187 Phaseolus vulgaris
Phvul.002G267600 5.0kb upstream 5.0kb upstream 9438 true Chr02: 43855188-43864625 Phaseolus vulgaris
Phvul.002G267600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 43859626-43864625 Phaseolus vulgaris
Phvul.002G267600 5.0kb downstream 5.0kb downstream 9438 true Chr02: 43850188-43859625 Phaseolus vulgaris
Phvul.002G267600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 43850188-43855187 Phaseolus vulgaris
Phvul.002G267600 10.0kb upstream 10.0kb upstream 14438 true Chr02: 43855188-43869625 Phaseolus vulgaris
Phvul.002G267600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 43859626-43869625 Phaseolus vulgaris
Phvul.002G267600 10.0kb downstream 10.0kb downstream 14438 true Chr02: 43845188-43859625 Phaseolus vulgaris
Phvul.002G267600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 43845188-43855187 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041324 5273 Angiosperm View MSA
122305903 5265 Fabidae View MSA
124063366 5270 Rosid View MSA
123746952 5271 Pentapetalae View MSA
122793650 5272 Eudicot View MSA
121348941 5274 Embryophyte View MSA
123381089 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.0265 0.0 6.8263    
cufflinks 1.65886 0.0 5.76459    
cufflinks 2.73558 0.0 8.58497   High
cufflinks 1.58565 0.0 5.62027    
cufflinks 1.49557 0.0 5.38375   Low
cufflinks 1.74695 0.0 6.04655    
cufflinks 1.66622 0.0 7.66219    
cufflinks 2.11915 0.0 8.91306    
cufflinks 1.9682 0.0 8.64109    
cufflinks 2.67606 0.0 11.2576   High
cufflinks 1.80561 0.0 6.2491    

0 Strain