Gene : Phvul.002G257800 P. vulgaris v2.1
Defline:  (1 of 10) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  2554
Name:  ? Phvul.002G257800 Secondary Identifier:  ? PAC:37177423
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G257800 0.5kb upstream 0.5kb upstream 2079 true Chr02: 42983102-42985180 Phaseolus vulgaris
Phvul.002G257800 0.5kb upstream 0.5kb upstream 500 false Chr02: 42984681-42985180 Phaseolus vulgaris
Phvul.002G257800 0.5kb downstream 0.5kb downstream 2079 true Chr02: 42982602-42984680 Phaseolus vulgaris
Phvul.002G257800 0.5kb downstream 0.5kb downstream 500 false Chr02: 42982602-42983101 Phaseolus vulgaris
Phvul.002G257800 1.0kb upstream 1.0kb upstream 2579 true Chr02: 42983102-42985680 Phaseolus vulgaris
Phvul.002G257800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 42984681-42985680 Phaseolus vulgaris
Phvul.002G257800 1.0kb downstream 1.0kb downstream 2579 true Chr02: 42982102-42984680 Phaseolus vulgaris
Phvul.002G257800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 42982102-42983101 Phaseolus vulgaris
Phvul.002G257800 2.0kb upstream 2.0kb upstream 3579 true Chr02: 42983102-42986680 Phaseolus vulgaris
Phvul.002G257800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 42984681-42986680 Phaseolus vulgaris
Phvul.002G257800 2.0kb downstream 2.0kb downstream 3579 true Chr02: 42981102-42984680 Phaseolus vulgaris
Phvul.002G257800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 42981102-42983101 Phaseolus vulgaris
Phvul.002G257800 5.0kb upstream 5.0kb upstream 6579 true Chr02: 42983102-42989680 Phaseolus vulgaris
Phvul.002G257800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 42984681-42989680 Phaseolus vulgaris
Phvul.002G257800 5.0kb downstream 5.0kb downstream 6579 true Chr02: 42978102-42984680 Phaseolus vulgaris
Phvul.002G257800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 42978102-42983101 Phaseolus vulgaris
Phvul.002G257800 10.0kb upstream 10.0kb upstream 11579 true Chr02: 42983102-42994680 Phaseolus vulgaris
Phvul.002G257800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 42984681-42994680 Phaseolus vulgaris
Phvul.002G257800 10.0kb downstream 10.0kb downstream 11579 true Chr02: 42973102-42984680 Phaseolus vulgaris
Phvul.002G257800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 42973102-42983101 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298040 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.3573 0.0 77.5829   High
cufflinks 0.367954 0.0 1.4852 Low  
cufflinks 0.808343 0.0 3.05925    
cufflinks 14.5158 0.0 40.8063   High
cufflinks 0.545044 0.0 2.14597 Low  
cufflinks 0.712461 0.0 2.72525    
cufflinks 0.85178 0.0 3.21094    
cufflinks 0.903944 0.0 3.37738    
cufflinks 0.743891 0.0 2.8441    
cufflinks 0.275931 0.0 1.14112 Low  
cufflinks 0.317103 0.0 1.29971 Low  

0 Strain