Gene : Phvul.002G262600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23315:SF66 - CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 Genomic Order:  2602
Name:  ? Phvul.002G262600 Secondary Identifier:  ? PAC:37176498
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G262600 0.5kb upstream 0.5kb upstream 11363 true Chr02: 43435093-43446455 Phaseolus vulgaris
Phvul.002G262600 0.5kb upstream 0.5kb upstream 500 false Chr02: 43445956-43446455 Phaseolus vulgaris
Phvul.002G262600 0.5kb downstream 0.5kb downstream 11363 true Chr02: 43434593-43445955 Phaseolus vulgaris
Phvul.002G262600 0.5kb downstream 0.5kb downstream 500 false Chr02: 43434593-43435092 Phaseolus vulgaris
Phvul.002G262600 1.0kb upstream 1.0kb upstream 11863 true Chr02: 43435093-43446955 Phaseolus vulgaris
Phvul.002G262600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 43445956-43446955 Phaseolus vulgaris
Phvul.002G262600 1.0kb downstream 1.0kb downstream 11863 true Chr02: 43434093-43445955 Phaseolus vulgaris
Phvul.002G262600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 43434093-43435092 Phaseolus vulgaris
Phvul.002G262600 2.0kb upstream 2.0kb upstream 12863 true Chr02: 43435093-43447955 Phaseolus vulgaris
Phvul.002G262600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 43445956-43447955 Phaseolus vulgaris
Phvul.002G262600 2.0kb downstream 2.0kb downstream 12863 true Chr02: 43433093-43445955 Phaseolus vulgaris
Phvul.002G262600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 43433093-43435092 Phaseolus vulgaris
Phvul.002G262600 5.0kb upstream 5.0kb upstream 15863 true Chr02: 43435093-43450955 Phaseolus vulgaris
Phvul.002G262600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 43445956-43450955 Phaseolus vulgaris
Phvul.002G262600 5.0kb downstream 5.0kb downstream 15863 true Chr02: 43430093-43445955 Phaseolus vulgaris
Phvul.002G262600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 43430093-43435092 Phaseolus vulgaris
Phvul.002G262600 10.0kb upstream 10.0kb upstream 20863 true Chr02: 43435093-43455955 Phaseolus vulgaris
Phvul.002G262600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 43445956-43455955 Phaseolus vulgaris
Phvul.002G262600 10.0kb downstream 10.0kb downstream 20863 true Chr02: 43425093-43445955 Phaseolus vulgaris
Phvul.002G262600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 43425093-43435092 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122048106 5273 Angiosperm View MSA
122311347 5265 Fabidae View MSA
124063700 5270 Rosid View MSA
123740295 5271 Pentapetalae View MSA
122787406 5272 Eudicot View MSA
121347002 5274 Embryophyte View MSA
123380478 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.08611 0.0 6.51209   Low
cufflinks 10.7853 0.0 35.3299    
cufflinks 24.1912 0.0 93.1712    
cufflinks 9.91808 0.0 28.2272    
cufflinks 24.4318 0.0 92.419    
cufflinks 39.5355 0.0 149.878 High High
cufflinks 22.8391 0.0 73.8567    
cufflinks 13.3355 0.0 45.2361    
cufflinks 29.454 0.0 101.068    
cufflinks 19.9684 0.0 73.0487    
cufflinks 22.9608 0.0 73.7634    

0 Strain