Gene : Phvul.003G035000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21089:SF1 - BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  356
Name:  ? Phvul.003G035000 Secondary Identifier:  ? PAC:37147837
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G035000 0.5kb upstream 0.5kb upstream 16168 true Chr03: 3609474-3625641 Phaseolus vulgaris
Phvul.003G035000 0.5kb upstream 0.5kb upstream 500 false Chr03: 3625142-3625641 Phaseolus vulgaris
Phvul.003G035000 0.5kb downstream 0.5kb downstream 16168 true Chr03: 3608974-3625141 Phaseolus vulgaris
Phvul.003G035000 0.5kb downstream 0.5kb downstream 500 false Chr03: 3608974-3609473 Phaseolus vulgaris
Phvul.003G035000 1.0kb upstream 1.0kb upstream 16668 true Chr03: 3609474-3626141 Phaseolus vulgaris
Phvul.003G035000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3625142-3626141 Phaseolus vulgaris
Phvul.003G035000 1.0kb downstream 1.0kb downstream 16668 true Chr03: 3608474-3625141 Phaseolus vulgaris
Phvul.003G035000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3608474-3609473 Phaseolus vulgaris
Phvul.003G035000 2.0kb upstream 2.0kb upstream 17668 true Chr03: 3609474-3627141 Phaseolus vulgaris
Phvul.003G035000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3625142-3627141 Phaseolus vulgaris
Phvul.003G035000 2.0kb downstream 2.0kb downstream 17668 true Chr03: 3607474-3625141 Phaseolus vulgaris
Phvul.003G035000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3607474-3609473 Phaseolus vulgaris
Phvul.003G035000 5.0kb upstream 5.0kb upstream 20668 true Chr03: 3609474-3630141 Phaseolus vulgaris
Phvul.003G035000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3625142-3630141 Phaseolus vulgaris
Phvul.003G035000 5.0kb downstream 5.0kb downstream 20668 true Chr03: 3604474-3625141 Phaseolus vulgaris
Phvul.003G035000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3604474-3609473 Phaseolus vulgaris
Phvul.003G035000 10.0kb upstream 10.0kb upstream 25668 true Chr03: 3609474-3635141 Phaseolus vulgaris
Phvul.003G035000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3625142-3635141 Phaseolus vulgaris
Phvul.003G035000 10.0kb downstream 10.0kb downstream 25668 true Chr03: 3599474-3625141 Phaseolus vulgaris
Phvul.003G035000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3599474-3609473 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309838 5265 Fabidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6771 0.0 52.5364    
cufflinks 9.3517 0.0 35.8706   Low
cufflinks 23.3833 0.0 74.7769    
cufflinks 21.1966 0.0 67.3321    
cufflinks 19.2306 0.0 67.8619    
cufflinks 14.5441 0.0 51.92    
cufflinks 19.186 0.0 67.3763    
cufflinks 16.5934 0.0 58.5143    
cufflinks 23.2914 0.0 81.2623    
cufflinks 8.05812 0.0 28.7309   Low
cufflinks 21.2457 0.0 74.3682    

0 Strain