Gene : Phvul.003G035600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31769:SF5 - EXPRESSED PROTEIN Genomic Order:  363
Name:  ? Phvul.003G035600 Secondary Identifier:  ? PAC:37148131
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G035600 0.5kb upstream 0.5kb upstream 6476 true Chr03: 3711050-3717525 Phaseolus vulgaris
Phvul.003G035600 0.5kb upstream 0.5kb upstream 500 false Chr03: 3711050-3711549 Phaseolus vulgaris
Phvul.003G035600 0.5kb downstream 0.5kb downstream 6476 true Chr03: 3711550-3718025 Phaseolus vulgaris
Phvul.003G035600 0.5kb downstream 0.5kb downstream 500 false Chr03: 3717526-3718025 Phaseolus vulgaris
Phvul.003G035600 1.0kb upstream 1.0kb upstream 6976 true Chr03: 3710550-3717525 Phaseolus vulgaris
Phvul.003G035600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3710550-3711549 Phaseolus vulgaris
Phvul.003G035600 1.0kb downstream 1.0kb downstream 6976 true Chr03: 3711550-3718525 Phaseolus vulgaris
Phvul.003G035600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3717526-3718525 Phaseolus vulgaris
Phvul.003G035600 2.0kb upstream 2.0kb upstream 7976 true Chr03: 3709550-3717525 Phaseolus vulgaris
Phvul.003G035600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3709550-3711549 Phaseolus vulgaris
Phvul.003G035600 2.0kb downstream 2.0kb downstream 7976 true Chr03: 3711550-3719525 Phaseolus vulgaris
Phvul.003G035600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3717526-3719525 Phaseolus vulgaris
Phvul.003G035600 5.0kb upstream 5.0kb upstream 10976 true Chr03: 3706550-3717525 Phaseolus vulgaris
Phvul.003G035600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3706550-3711549 Phaseolus vulgaris
Phvul.003G035600 5.0kb downstream 5.0kb downstream 10976 true Chr03: 3711550-3722525 Phaseolus vulgaris
Phvul.003G035600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3717526-3722525 Phaseolus vulgaris
Phvul.003G035600 10.0kb upstream 10.0kb upstream 15976 true Chr03: 3701550-3717525 Phaseolus vulgaris
Phvul.003G035600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3701550-3711549 Phaseolus vulgaris
Phvul.003G035600 10.0kb downstream 10.0kb downstream 15976 true Chr03: 3711550-3727525 Phaseolus vulgaris
Phvul.003G035600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3717526-3727525 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302442 5265 Fabidae View MSA
124062439 5270 Rosid View MSA
123740308 5271 Pentapetalae View MSA
122797476 5272 Eudicot View MSA
122047761 5273 Angiosperm View MSA
121349405 5274 Embryophyte View MSA
123381298 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.649 0.0 37.7738   Low
cufflinks 32.2776 0.0 84.0354   High
cufflinks 15.5436 0.0 42.5209    
cufflinks 22.1173 0.0 59.0231    
cufflinks 19.8031 0.0 53.3362    
cufflinks 14.7601 0.0 40.5707    
cufflinks 16.2152 0.0 44.2023    
cufflinks 22.0251 0.0 58.4587    
cufflinks 11.112 0.0 31.3826   Low
cufflinks 27.5756 0.0 72.3142   High
cufflinks 26.1291 0.0 68.843    

0 Strain