Gene : Phvul.003G041500 P. vulgaris v2.1
Defline:  (1 of 4) K18635 - protein SPIRAL1 and related proteins (SPR1) Genomic Order:  423
Name:  ? Phvul.003G041500 Secondary Identifier:  ? PAC:37144936
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G041500 0.5kb upstream 0.5kb upstream 2830 true Chr03: 4761740-4764569 Phaseolus vulgaris
Phvul.003G041500 0.5kb upstream 0.5kb upstream 500 false Chr03: 4764070-4764569 Phaseolus vulgaris
Phvul.003G041500 0.5kb downstream 0.5kb downstream 2830 true Chr03: 4761240-4764069 Phaseolus vulgaris
Phvul.003G041500 0.5kb downstream 0.5kb downstream 500 false Chr03: 4761240-4761739 Phaseolus vulgaris
Phvul.003G041500 1.0kb upstream 1.0kb upstream 3330 true Chr03: 4761740-4765069 Phaseolus vulgaris
Phvul.003G041500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 4764070-4765069 Phaseolus vulgaris
Phvul.003G041500 1.0kb downstream 1.0kb downstream 3330 true Chr03: 4760740-4764069 Phaseolus vulgaris
Phvul.003G041500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 4760740-4761739 Phaseolus vulgaris
Phvul.003G041500 2.0kb upstream 2.0kb upstream 4330 true Chr03: 4761740-4766069 Phaseolus vulgaris
Phvul.003G041500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 4764070-4766069 Phaseolus vulgaris
Phvul.003G041500 2.0kb downstream 2.0kb downstream 4330 true Chr03: 4759740-4764069 Phaseolus vulgaris
Phvul.003G041500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 4759740-4761739 Phaseolus vulgaris
Phvul.003G041500 5.0kb upstream 5.0kb upstream 7330 true Chr03: 4761740-4769069 Phaseolus vulgaris
Phvul.003G041500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 4764070-4769069 Phaseolus vulgaris
Phvul.003G041500 5.0kb downstream 5.0kb downstream 7330 true Chr03: 4756740-4764069 Phaseolus vulgaris
Phvul.003G041500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 4756740-4761739 Phaseolus vulgaris
Phvul.003G041500 10.0kb upstream 10.0kb upstream 12330 true Chr03: 4761740-4774069 Phaseolus vulgaris
Phvul.003G041500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 4764070-4774069 Phaseolus vulgaris
Phvul.003G041500 10.0kb downstream 10.0kb downstream 12330 true Chr03: 4751740-4764069 Phaseolus vulgaris
Phvul.003G041500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 4751740-4761739 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314267 5265 Fabidae View MSA
124060662 5270 Rosid View MSA
123749851 5271 Pentapetalae View MSA
122787340 5272 Eudicot View MSA
122045105 5273 Angiosperm View MSA
121351504 5274 Embryophyte View MSA
123425662 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 182.58 0.0 486.336 High  
cufflinks 148.988 0.0 390.327 High  
cufflinks 98.291 0.0 254.321 High  
cufflinks 320.787 0.0 899.103 High High
cufflinks 193.902 0.0 517.448 High  
cufflinks 91.5303 0.0 236.652 High Low
cufflinks 93.0229 0.0 240.573 High  
cufflinks 76.1606 0.0 196.958 High Low
cufflinks 126.135 0.0 328.573 High  
cufflinks 176.984 0.0 468.165 High  
cufflinks 222.175 0.0 598.635 High  

0 Strain