Gene : Phvul.003G026900 P. vulgaris v2.1
Defline:  (1 of 1) K00748 - lipid-A-disaccharide synthase (lpxB) Genomic Order:  277
Name:  ? Phvul.003G026900 Secondary Identifier:  ? PAC:37146254
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris NAGLIPASYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G026900 0.5kb upstream 0.5kb upstream 5063 true Chr03: 2585368-2590430 Phaseolus vulgaris
Phvul.003G026900 0.5kb upstream 0.5kb upstream 500 false Chr03: 2585368-2585867 Phaseolus vulgaris
Phvul.003G026900 0.5kb downstream 0.5kb downstream 5063 true Chr03: 2585868-2590930 Phaseolus vulgaris
Phvul.003G026900 0.5kb downstream 0.5kb downstream 500 false Chr03: 2590431-2590930 Phaseolus vulgaris
Phvul.003G026900 1.0kb upstream 1.0kb upstream 5563 true Chr03: 2584868-2590430 Phaseolus vulgaris
Phvul.003G026900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2584868-2585867 Phaseolus vulgaris
Phvul.003G026900 1.0kb downstream 1.0kb downstream 5563 true Chr03: 2585868-2591430 Phaseolus vulgaris
Phvul.003G026900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2590431-2591430 Phaseolus vulgaris
Phvul.003G026900 2.0kb upstream 2.0kb upstream 6563 true Chr03: 2583868-2590430 Phaseolus vulgaris
Phvul.003G026900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2583868-2585867 Phaseolus vulgaris
Phvul.003G026900 2.0kb downstream 2.0kb downstream 6563 true Chr03: 2585868-2592430 Phaseolus vulgaris
Phvul.003G026900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2590431-2592430 Phaseolus vulgaris
Phvul.003G026900 5.0kb upstream 5.0kb upstream 9563 true Chr03: 2580868-2590430 Phaseolus vulgaris
Phvul.003G026900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2580868-2585867 Phaseolus vulgaris
Phvul.003G026900 5.0kb downstream 5.0kb downstream 9563 true Chr03: 2585868-2595430 Phaseolus vulgaris
Phvul.003G026900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2590431-2595430 Phaseolus vulgaris
Phvul.003G026900 10.0kb upstream 10.0kb upstream 14563 true Chr03: 2575868-2590430 Phaseolus vulgaris
Phvul.003G026900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2575868-2585867 Phaseolus vulgaris
Phvul.003G026900 10.0kb downstream 10.0kb downstream 14563 true Chr03: 2585868-2600430 Phaseolus vulgaris
Phvul.003G026900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2590431-2600430 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303086 5265 Fabidae View MSA
124067392 5270 Rosid View MSA
123747166 5271 Pentapetalae View MSA
122791278 5272 Eudicot View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.99311 0.0 20.0288    
cufflinks 3.80635 0.0 16.3071    
cufflinks 7.98248 0.0 28.7244   High
cufflinks 3.98551 0.0 17.2441    
cufflinks 3.5748 0.0 13.5845   Low
cufflinks 4.57429 0.0 18.6653    
cufflinks 4.92702 0.0 19.8099    
cufflinks 4.92829 0.0 19.6368    
cufflinks 5.46943 0.0 21.4815    
cufflinks 5.83501 0.0 23.8254    
cufflinks 3.29015 0.0 14.841   Low

0 Strain