Gene : Phvul.003G025700 P. vulgaris v2.1
Defline:  (1 of 3) K18749 - protein LSM14 (LSM14, RAP55, SCD6) Genomic Order:  265
Name:  ? Phvul.003G025700 Secondary Identifier:  ? PAC:37146281
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G025700 0.5kb upstream 0.5kb upstream 6874 true Chr03: 2488118-2494991 Phaseolus vulgaris
Phvul.003G025700 0.5kb upstream 0.5kb upstream 500 false Chr03: 2488118-2488617 Phaseolus vulgaris
Phvul.003G025700 0.5kb downstream 0.5kb downstream 6874 true Chr03: 2488618-2495491 Phaseolus vulgaris
Phvul.003G025700 0.5kb downstream 0.5kb downstream 500 false Chr03: 2494992-2495491 Phaseolus vulgaris
Phvul.003G025700 1.0kb upstream 1.0kb upstream 7374 true Chr03: 2487618-2494991 Phaseolus vulgaris
Phvul.003G025700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2487618-2488617 Phaseolus vulgaris
Phvul.003G025700 1.0kb downstream 1.0kb downstream 7374 true Chr03: 2488618-2495991 Phaseolus vulgaris
Phvul.003G025700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2494992-2495991 Phaseolus vulgaris
Phvul.003G025700 2.0kb upstream 2.0kb upstream 8374 true Chr03: 2486618-2494991 Phaseolus vulgaris
Phvul.003G025700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2486618-2488617 Phaseolus vulgaris
Phvul.003G025700 2.0kb downstream 2.0kb downstream 8374 true Chr03: 2488618-2496991 Phaseolus vulgaris
Phvul.003G025700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2494992-2496991 Phaseolus vulgaris
Phvul.003G025700 5.0kb upstream 5.0kb upstream 11374 true Chr03: 2483618-2494991 Phaseolus vulgaris
Phvul.003G025700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2483618-2488617 Phaseolus vulgaris
Phvul.003G025700 5.0kb downstream 5.0kb downstream 11374 true Chr03: 2488618-2499991 Phaseolus vulgaris
Phvul.003G025700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2494992-2499991 Phaseolus vulgaris
Phvul.003G025700 10.0kb upstream 10.0kb upstream 16374 true Chr03: 2478618-2494991 Phaseolus vulgaris
Phvul.003G025700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2478618-2488617 Phaseolus vulgaris
Phvul.003G025700 10.0kb downstream 10.0kb downstream 16374 true Chr03: 2488618-2504991 Phaseolus vulgaris
Phvul.003G025700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2494992-2504991 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309189 5265 Fabidae View MSA
124065537 5270 Rosid View MSA
123751625 5271 Pentapetalae View MSA
122797908 5272 Eudicot View MSA
122051702 5273 Angiosperm View MSA
121348013 5274 Embryophyte View MSA
123428687 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.5258 0.0 99.1518    
cufflinks 33.2889 0.0 108.457 High  
cufflinks 29.7945 0.0 96.8297    
cufflinks 30.7336 0.0 99.7441    
cufflinks 41.0097 0.0 136.417 High High
cufflinks 23.4032 0.0 75.0196   Low
cufflinks 33.6005 0.0 110.167 High  
cufflinks 31.4409 0.0 102.385 High  
cufflinks 42.3045 0.0 142.548 High High
cufflinks 39.2257 0.0 130.209 High  
cufflinks 38.0981 0.0 125.707 High  

0 Strain