Gene : Phvul.003G027700 P. vulgaris v2.1
Defline:  (1 of 1) PF01936//PF12872 - NYN domain (NYN) // OST-HTH/LOTUS domain (OST-HTH) Genomic Order:  495
Name:  ? Phvul.003G027700 Secondary Identifier:  ? PAC:37144588
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G027700 0.5kb upstream 0.5kb upstream 3886 true Chr03: 6004251-6008136 Phaseolus vulgaris
Phvul.003G027700 0.5kb upstream 0.5kb upstream 500 false Chr03: 6007637-6008136 Phaseolus vulgaris
Phvul.003G027700 0.5kb downstream 0.5kb downstream 3886 true Chr03: 6003751-6007636 Phaseolus vulgaris
Phvul.003G027700 0.5kb downstream 0.5kb downstream 500 false Chr03: 6003751-6004250 Phaseolus vulgaris
Phvul.003G027700 1.0kb upstream 1.0kb upstream 4386 true Chr03: 6004251-6008636 Phaseolus vulgaris
Phvul.003G027700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6007637-6008636 Phaseolus vulgaris
Phvul.003G027700 1.0kb downstream 1.0kb downstream 4386 true Chr03: 6003251-6007636 Phaseolus vulgaris
Phvul.003G027700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6003251-6004250 Phaseolus vulgaris
Phvul.003G027700 2.0kb upstream 2.0kb upstream 5386 true Chr03: 6004251-6009636 Phaseolus vulgaris
Phvul.003G027700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6007637-6009636 Phaseolus vulgaris
Phvul.003G027700 2.0kb downstream 2.0kb downstream 5386 true Chr03: 6002251-6007636 Phaseolus vulgaris
Phvul.003G027700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6002251-6004250 Phaseolus vulgaris
Phvul.003G027700 5.0kb upstream 5.0kb upstream 8386 true Chr03: 6004251-6012636 Phaseolus vulgaris
Phvul.003G027700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6007637-6012636 Phaseolus vulgaris
Phvul.003G027700 5.0kb downstream 5.0kb downstream 8386 true Chr03: 5999251-6007636 Phaseolus vulgaris
Phvul.003G027700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5999251-6004250 Phaseolus vulgaris
Phvul.003G027700 10.0kb upstream 10.0kb upstream 13386 true Chr03: 6004251-6017636 Phaseolus vulgaris
Phvul.003G027700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6007637-6017636 Phaseolus vulgaris
Phvul.003G027700 10.0kb downstream 10.0kb downstream 13386 true Chr03: 5994251-6007636 Phaseolus vulgaris
Phvul.003G027700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5994251-6004250 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306779 5265 Fabidae View MSA
124060923 5270 Rosid View MSA
123747384 5271 Pentapetalae View MSA
122791498 5272 Eudicot View MSA
122044167 5273 Angiosperm View MSA
121346389 5274 Embryophyte View MSA
123380376 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.51811 0.0 20.1119    
cufflinks 5.12677 0.0 14.2096   Low
cufflinks 9.24311 0.0 24.4005   High
cufflinks 6.40718 0.0 17.5202    
cufflinks 6.75036 0.0 18.3651    
cufflinks 6.73709 0.0 18.22    
cufflinks 8.18627 0.0 21.8026    
cufflinks 5.09899 0.0 14.0648   Low
cufflinks 9.08632 0.0 24.0723   High
cufflinks 6.27307 0.0 17.0952    
cufflinks 6.03759 0.0 16.5711    

0 Strain