Gene : Phvul.003G031400 P. vulgaris v2.1
Defline:  (1 of 4) PTHR10165:SF80 - LIPID PHOSPHATE PHOSPHATASE 1-RELATED Genomic Order:  321
Name:  ? Phvul.003G031400 Secondary Identifier:  ? PAC:37146824
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRIGLSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G031400 0.5kb upstream 0.5kb upstream 4820 true Chr03: 3178888-3183707 Phaseolus vulgaris
Phvul.003G031400 0.5kb upstream 0.5kb upstream 500 false Chr03: 3183208-3183707 Phaseolus vulgaris
Phvul.003G031400 0.5kb downstream 0.5kb downstream 4820 true Chr03: 3178388-3183207 Phaseolus vulgaris
Phvul.003G031400 0.5kb downstream 0.5kb downstream 500 false Chr03: 3178388-3178887 Phaseolus vulgaris
Phvul.003G031400 1.0kb upstream 1.0kb upstream 5320 true Chr03: 3178888-3184207 Phaseolus vulgaris
Phvul.003G031400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3183208-3184207 Phaseolus vulgaris
Phvul.003G031400 1.0kb downstream 1.0kb downstream 5320 true Chr03: 3177888-3183207 Phaseolus vulgaris
Phvul.003G031400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3177888-3178887 Phaseolus vulgaris
Phvul.003G031400 2.0kb upstream 2.0kb upstream 6320 true Chr03: 3178888-3185207 Phaseolus vulgaris
Phvul.003G031400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3183208-3185207 Phaseolus vulgaris
Phvul.003G031400 2.0kb downstream 2.0kb downstream 6320 true Chr03: 3176888-3183207 Phaseolus vulgaris
Phvul.003G031400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3176888-3178887 Phaseolus vulgaris
Phvul.003G031400 5.0kb upstream 5.0kb upstream 9320 true Chr03: 3178888-3188207 Phaseolus vulgaris
Phvul.003G031400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3183208-3188207 Phaseolus vulgaris
Phvul.003G031400 5.0kb downstream 5.0kb downstream 9320 true Chr03: 3173888-3183207 Phaseolus vulgaris
Phvul.003G031400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3173888-3178887 Phaseolus vulgaris
Phvul.003G031400 10.0kb upstream 10.0kb upstream 14320 true Chr03: 3178888-3193207 Phaseolus vulgaris
Phvul.003G031400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3183208-3193207 Phaseolus vulgaris
Phvul.003G031400 10.0kb downstream 10.0kb downstream 14320 true Chr03: 3168888-3183207 Phaseolus vulgaris
Phvul.003G031400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3168888-3178887 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254196 5265 Fabidae View MSA
124037738 5270 Rosid View MSA
123740840 5271 Pentapetalae View MSA
122793689 5272 Eudicot View MSA
122042575 5273 Angiosperm View MSA
121350600 5274 Embryophyte View MSA
123428329 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.193446 0.0 0.811532 Low Low
cufflinks 0.671665 0.0 4.58453    
cufflinks 1.80245 0.0 13.3058    
cufflinks 0.316675 0.0 1.27035 Low Low
cufflinks 3.00946 0.0 16.798   High
cufflinks 2.24659 0.0 13.7049    
cufflinks 1.69816 0.0 10.9835    
cufflinks 3.04322 0.0 19.5123   High
cufflinks 0.777894 0.0 6.54614    
cufflinks 0.561612 0.0 5.11282    
cufflinks 2.88287 0.0 16.0267    

0 Strain