Gene : Phvul.003G032500 P. vulgaris v2.1
Defline:  (1 of 16) K13947 - auxin efflux carrier family (PIN) Genomic Order:  332
Name:  ? Phvul.003G032500 Secondary Identifier:  ? PAC:37146616
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G032500 0.5kb upstream 0.5kb upstream 5998 true Chr03: 3327834-3333831 Phaseolus vulgaris
Phvul.003G032500 0.5kb upstream 0.5kb upstream 500 false Chr03: 3333332-3333831 Phaseolus vulgaris
Phvul.003G032500 0.5kb downstream 0.5kb downstream 5998 true Chr03: 3327334-3333331 Phaseolus vulgaris
Phvul.003G032500 0.5kb downstream 0.5kb downstream 500 false Chr03: 3327334-3327833 Phaseolus vulgaris
Phvul.003G032500 1.0kb upstream 1.0kb upstream 6498 true Chr03: 3327834-3334331 Phaseolus vulgaris
Phvul.003G032500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3333332-3334331 Phaseolus vulgaris
Phvul.003G032500 1.0kb downstream 1.0kb downstream 6498 true Chr03: 3326834-3333331 Phaseolus vulgaris
Phvul.003G032500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3326834-3327833 Phaseolus vulgaris
Phvul.003G032500 2.0kb upstream 2.0kb upstream 7498 true Chr03: 3327834-3335331 Phaseolus vulgaris
Phvul.003G032500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3333332-3335331 Phaseolus vulgaris
Phvul.003G032500 2.0kb downstream 2.0kb downstream 7498 true Chr03: 3325834-3333331 Phaseolus vulgaris
Phvul.003G032500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3325834-3327833 Phaseolus vulgaris
Phvul.003G032500 5.0kb upstream 5.0kb upstream 10498 true Chr03: 3327834-3338331 Phaseolus vulgaris
Phvul.003G032500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3333332-3338331 Phaseolus vulgaris
Phvul.003G032500 5.0kb downstream 5.0kb downstream 10498 true Chr03: 3322834-3333331 Phaseolus vulgaris
Phvul.003G032500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3322834-3327833 Phaseolus vulgaris
Phvul.003G032500 10.0kb upstream 10.0kb upstream 15498 true Chr03: 3327834-3343331 Phaseolus vulgaris
Phvul.003G032500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3333332-3343331 Phaseolus vulgaris
Phvul.003G032500 10.0kb downstream 10.0kb downstream 15498 true Chr03: 3317834-3333331 Phaseolus vulgaris
Phvul.003G032500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3317834-3327833 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253851 5265 Fabidae View MSA
124067962 5270 Rosid View MSA
123747841 5271 Pentapetalae View MSA
122796951 5272 Eudicot View MSA
122046141 5273 Angiosperm View MSA
121351759 5274 Embryophyte View MSA
123382310 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.61525 0.0 7.61564    
cufflinks 11.8879 0.0 30.86    
cufflinks 9.09463 0.0 23.9088    
cufflinks 3.97007 0.0 11.0252    
cufflinks 16.7334 0.0 43.2722   High
cufflinks 12.2485 0.0 31.7707    
cufflinks 2.60701 0.0 7.53267    
cufflinks 0.926397 0.0 3.03807   Low
cufflinks 2.28817 0.0 6.7261    
cufflinks 4.14832 0.0 11.5761    
cufflinks 15.2724 0.0 39.4764   High

0 Strain