Gene : Phvul.003G019300 P. vulgaris v2.1
Defline:  (1 of 1) K15446 - tRNA:m4X modification enzyme [EC:2.1.1.225] (TRM13, CCDC76) Genomic Order:  202
Name:  ? Phvul.003G019300 Secondary Identifier:  ? PAC:37146178
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6829 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G019300 0.5kb upstream 0.5kb upstream 5003 true Chr03: 1859789-1864791 Phaseolus vulgaris
Phvul.003G019300 0.5kb upstream 0.5kb upstream 500 false Chr03: 1859789-1860288 Phaseolus vulgaris
Phvul.003G019300 0.5kb downstream 0.5kb downstream 5003 true Chr03: 1860289-1865291 Phaseolus vulgaris
Phvul.003G019300 0.5kb downstream 0.5kb downstream 500 false Chr03: 1864792-1865291 Phaseolus vulgaris
Phvul.003G019300 1.0kb upstream 1.0kb upstream 5503 true Chr03: 1859289-1864791 Phaseolus vulgaris
Phvul.003G019300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1859289-1860288 Phaseolus vulgaris
Phvul.003G019300 1.0kb downstream 1.0kb downstream 5503 true Chr03: 1860289-1865791 Phaseolus vulgaris
Phvul.003G019300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1864792-1865791 Phaseolus vulgaris
Phvul.003G019300 2.0kb upstream 2.0kb upstream 6503 true Chr03: 1858289-1864791 Phaseolus vulgaris
Phvul.003G019300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1858289-1860288 Phaseolus vulgaris
Phvul.003G019300 2.0kb downstream 2.0kb downstream 6503 true Chr03: 1860289-1866791 Phaseolus vulgaris
Phvul.003G019300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1864792-1866791 Phaseolus vulgaris
Phvul.003G019300 5.0kb upstream 5.0kb upstream 9503 true Chr03: 1855289-1864791 Phaseolus vulgaris
Phvul.003G019300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1855289-1860288 Phaseolus vulgaris
Phvul.003G019300 5.0kb downstream 5.0kb downstream 9503 true Chr03: 1860289-1869791 Phaseolus vulgaris
Phvul.003G019300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1864792-1869791 Phaseolus vulgaris
Phvul.003G019300 10.0kb upstream 10.0kb upstream 14503 true Chr03: 1850289-1864791 Phaseolus vulgaris
Phvul.003G019300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1850289-1860288 Phaseolus vulgaris
Phvul.003G019300 10.0kb downstream 10.0kb downstream 14503 true Chr03: 1860289-1874791 Phaseolus vulgaris
Phvul.003G019300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1864792-1874791 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307487 5265 Fabidae View MSA
124062140 5270 Rosid View MSA
123739890 5271 Pentapetalae View MSA
122785784 5272 Eudicot View MSA
122046541 5273 Angiosperm View MSA
121347915 5274 Embryophyte View MSA
123424709 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.30838 0.0 9.95806    
cufflinks 3.03541 0.0 9.26215    
cufflinks 4.23623 0.0 12.3834   High
cufflinks 2.95128 0.0 9.13422    
cufflinks 2.92119 0.0 9.0297    
cufflinks 4.02409 0.0 11.8739    
cufflinks 3.85592 0.0 11.455    
cufflinks 4.79167 0.0 13.8395   High
cufflinks 2.9839 0.0 9.15109    
cufflinks 2.88558 0.0 8.8813    
cufflinks 2.92062 0.0 9.0066    

0 Strain