Gene : Phvul.003G021600 P. vulgaris v2.1
Defline:  (1 of 1) 4.1.2.53 - 2-keto-3-deoxy-L-rhamnonate aldolase / KDR aldolase Genomic Order:  225
Name:  ? Phvul.003G021600 Secondary Identifier:  ? PAC:37146069
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G021600 0.5kb upstream 0.5kb upstream 3097 true Chr03: 2059483-2062579 Phaseolus vulgaris
Phvul.003G021600 0.5kb upstream 0.5kb upstream 500 false Chr03: 2062080-2062579 Phaseolus vulgaris
Phvul.003G021600 0.5kb downstream 0.5kb downstream 3097 true Chr03: 2058983-2062079 Phaseolus vulgaris
Phvul.003G021600 0.5kb downstream 0.5kb downstream 500 false Chr03: 2058983-2059482 Phaseolus vulgaris
Phvul.003G021600 1.0kb upstream 1.0kb upstream 3597 true Chr03: 2059483-2063079 Phaseolus vulgaris
Phvul.003G021600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2062080-2063079 Phaseolus vulgaris
Phvul.003G021600 1.0kb downstream 1.0kb downstream 3597 true Chr03: 2058483-2062079 Phaseolus vulgaris
Phvul.003G021600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2058483-2059482 Phaseolus vulgaris
Phvul.003G021600 2.0kb upstream 2.0kb upstream 4597 true Chr03: 2059483-2064079 Phaseolus vulgaris
Phvul.003G021600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2062080-2064079 Phaseolus vulgaris
Phvul.003G021600 2.0kb downstream 2.0kb downstream 4597 true Chr03: 2057483-2062079 Phaseolus vulgaris
Phvul.003G021600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2057483-2059482 Phaseolus vulgaris
Phvul.003G021600 5.0kb upstream 5.0kb upstream 7597 true Chr03: 2059483-2067079 Phaseolus vulgaris
Phvul.003G021600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2062080-2067079 Phaseolus vulgaris
Phvul.003G021600 5.0kb downstream 5.0kb downstream 7597 true Chr03: 2054483-2062079 Phaseolus vulgaris
Phvul.003G021600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2054483-2059482 Phaseolus vulgaris
Phvul.003G021600 10.0kb upstream 10.0kb upstream 12597 true Chr03: 2059483-2072079 Phaseolus vulgaris
Phvul.003G021600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2062080-2072079 Phaseolus vulgaris
Phvul.003G021600 10.0kb downstream 10.0kb downstream 12597 true Chr03: 2049483-2062079 Phaseolus vulgaris
Phvul.003G021600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2049483-2059482 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306785 5265 Fabidae View MSA
124061282 5270 Rosid View MSA
123741108 5271 Pentapetalae View MSA
122791173 5272 Eudicot View MSA
122045726 5273 Angiosperm View MSA
121345930 5274 Embryophyte View MSA
123426145 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.76337 0.0 21.487    
cufflinks 12.7395 0.0 46.4558    
cufflinks 28.0724 0.0 94.6571   High
cufflinks 9.25372 0.0 31.3232    
cufflinks 7.79328 0.0 27.8482    
cufflinks 12.6198 0.0 46.2098    
cufflinks 1.08993 0.0 6.34906   Low
cufflinks 4.17934 0.0 17.1777    
cufflinks 0.297319 0.0 2.03077 Low Low
cufflinks 10.0041 0.0 36.7015    
cufflinks 5.40425 0.0 20.1307    

0 Strain