Gene : Phvul.003G023500 P. vulgaris v2.1
Defline:  (1 of 1) 2.4.2.19 - Nicotinate-nucleotide diphosphorylase (carboxylating) / Quinolinate phosphoribosyltransferase (decarboxylating) Genomic Order:  243
Name:  ? Phvul.003G023500 Secondary Identifier:  ? PAC:37146613
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5653 Phaseolus vulgaris pathologic  
Pvulgaris PYRIDNUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G023500 0.5kb upstream 0.5kb upstream 12096 true Chr03: 2216247-2228342 Phaseolus vulgaris
Phvul.003G023500 0.5kb upstream 0.5kb upstream 500 false Chr03: 2227843-2228342 Phaseolus vulgaris
Phvul.003G023500 0.5kb downstream 0.5kb downstream 12096 true Chr03: 2215747-2227842 Phaseolus vulgaris
Phvul.003G023500 0.5kb downstream 0.5kb downstream 500 false Chr03: 2215747-2216246 Phaseolus vulgaris
Phvul.003G023500 1.0kb upstream 1.0kb upstream 12596 true Chr03: 2216247-2228842 Phaseolus vulgaris
Phvul.003G023500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 2227843-2228842 Phaseolus vulgaris
Phvul.003G023500 1.0kb downstream 1.0kb downstream 12596 true Chr03: 2215247-2227842 Phaseolus vulgaris
Phvul.003G023500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 2215247-2216246 Phaseolus vulgaris
Phvul.003G023500 2.0kb upstream 2.0kb upstream 13596 true Chr03: 2216247-2229842 Phaseolus vulgaris
Phvul.003G023500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 2227843-2229842 Phaseolus vulgaris
Phvul.003G023500 2.0kb downstream 2.0kb downstream 13596 true Chr03: 2214247-2227842 Phaseolus vulgaris
Phvul.003G023500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 2214247-2216246 Phaseolus vulgaris
Phvul.003G023500 5.0kb upstream 5.0kb upstream 16596 true Chr03: 2216247-2232842 Phaseolus vulgaris
Phvul.003G023500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 2227843-2232842 Phaseolus vulgaris
Phvul.003G023500 5.0kb downstream 5.0kb downstream 16596 true Chr03: 2211247-2227842 Phaseolus vulgaris
Phvul.003G023500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 2211247-2216246 Phaseolus vulgaris
Phvul.003G023500 10.0kb upstream 10.0kb upstream 21596 true Chr03: 2216247-2237842 Phaseolus vulgaris
Phvul.003G023500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 2227843-2237842 Phaseolus vulgaris
Phvul.003G023500 10.0kb downstream 10.0kb downstream 21596 true Chr03: 2206247-2227842 Phaseolus vulgaris
Phvul.003G023500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 2206247-2216246 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026837 5273 Angiosperm View MSA
122301296 5265 Fabidae View MSA
124067414 5270 Rosid View MSA
123740298 5271 Pentapetalae View MSA
122790816 5272 Eudicot View MSA
121346230 5274 Embryophyte View MSA
123424244 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.1602 0.0 179.893 High High
cufflinks 18.0951 0.0 51.3598    
cufflinks 25.1934 0.0 81.1424    
cufflinks 22.4054 0.0 87.402    
cufflinks 14.6365 0.0 48.565    
cufflinks 12.5036 0.0 36.9002    
cufflinks 13.9965 0.0 98.015    
cufflinks 13.2119 0.0 74.111    
cufflinks 11.333 0.0 342.031   Low
cufflinks 21.5762 0.0 85.0927    
cufflinks 15.5946 0.0 64.2953    

0 Strain