Gene : Phvul.003G013100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31142:SF3 - PROTEIN TOM THREE HOMOLOG 1-RELATED Genomic Order:  139
Name:  ? Phvul.003G013100 Secondary Identifier:  ? PAC:37145620
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G013100 0.5kb upstream 0.5kb upstream 11072 true Chr03: 1336512-1347583 Phaseolus vulgaris
Phvul.003G013100 0.5kb upstream 0.5kb upstream 500 false Chr03: 1347084-1347583 Phaseolus vulgaris
Phvul.003G013100 0.5kb downstream 0.5kb downstream 11072 true Chr03: 1336012-1347083 Phaseolus vulgaris
Phvul.003G013100 0.5kb downstream 0.5kb downstream 500 false Chr03: 1336012-1336511 Phaseolus vulgaris
Phvul.003G013100 1.0kb upstream 1.0kb upstream 11572 true Chr03: 1336512-1348083 Phaseolus vulgaris
Phvul.003G013100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1347084-1348083 Phaseolus vulgaris
Phvul.003G013100 1.0kb downstream 1.0kb downstream 11572 true Chr03: 1335512-1347083 Phaseolus vulgaris
Phvul.003G013100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1335512-1336511 Phaseolus vulgaris
Phvul.003G013100 2.0kb upstream 2.0kb upstream 12572 true Chr03: 1336512-1349083 Phaseolus vulgaris
Phvul.003G013100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1347084-1349083 Phaseolus vulgaris
Phvul.003G013100 2.0kb downstream 2.0kb downstream 12572 true Chr03: 1334512-1347083 Phaseolus vulgaris
Phvul.003G013100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1334512-1336511 Phaseolus vulgaris
Phvul.003G013100 5.0kb upstream 5.0kb upstream 15572 true Chr03: 1336512-1352083 Phaseolus vulgaris
Phvul.003G013100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1347084-1352083 Phaseolus vulgaris
Phvul.003G013100 5.0kb downstream 5.0kb downstream 15572 true Chr03: 1331512-1347083 Phaseolus vulgaris
Phvul.003G013100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1331512-1336511 Phaseolus vulgaris
Phvul.003G013100 10.0kb upstream 10.0kb upstream 20572 true Chr03: 1336512-1357083 Phaseolus vulgaris
Phvul.003G013100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1347084-1357083 Phaseolus vulgaris
Phvul.003G013100 10.0kb downstream 10.0kb downstream 20572 true Chr03: 1326512-1347083 Phaseolus vulgaris
Phvul.003G013100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1326512-1336511 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311267 5265 Fabidae View MSA
124070535 5270 Rosid View MSA
123753465 5271 Pentapetalae View MSA
122796045 5272 Eudicot View MSA
122049721 5273 Angiosperm View MSA
121345693 5274 Embryophyte View MSA
123426001 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.2377 0.0 138.038 High  
cufflinks 44.326 0.0 114.603 High  
cufflinks 34.306 0.0 88.8537    
cufflinks 48.0827 0.0 124.422 High  
cufflinks 52.5814 0.0 136.26 High  
cufflinks 27.3654 0.0 71.3199   Low
cufflinks 34.6264 0.0 89.6716 High  
cufflinks 34.0346 0.0 88.1742 High  
cufflinks 44.3549 0.0 114.653 High  
cufflinks 67.7047 0.0 177.175 High High
cufflinks 48.1752 0.0 124.655 High  

0 Strain