Gene : Phvul.003G012700 P. vulgaris v2.1
Defline:  (1 of 16) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  135
Name:  ? Phvul.003G012700 Secondary Identifier:  ? PAC:37146998
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G012700 0.5kb upstream 0.5kb upstream 3126 true Chr03: 1301870-1304995 Phaseolus vulgaris
Phvul.003G012700 0.5kb upstream 0.5kb upstream 500 false Chr03: 1301870-1302369 Phaseolus vulgaris
Phvul.003G012700 0.5kb downstream 0.5kb downstream 3126 true Chr03: 1302370-1305495 Phaseolus vulgaris
Phvul.003G012700 0.5kb downstream 0.5kb downstream 500 false Chr03: 1304996-1305495 Phaseolus vulgaris
Phvul.003G012700 1.0kb upstream 1.0kb upstream 3626 true Chr03: 1301370-1304995 Phaseolus vulgaris
Phvul.003G012700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1301370-1302369 Phaseolus vulgaris
Phvul.003G012700 1.0kb downstream 1.0kb downstream 3626 true Chr03: 1302370-1305995 Phaseolus vulgaris
Phvul.003G012700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1304996-1305995 Phaseolus vulgaris
Phvul.003G012700 2.0kb upstream 2.0kb upstream 4626 true Chr03: 1300370-1304995 Phaseolus vulgaris
Phvul.003G012700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1300370-1302369 Phaseolus vulgaris
Phvul.003G012700 2.0kb downstream 2.0kb downstream 4626 true Chr03: 1302370-1306995 Phaseolus vulgaris
Phvul.003G012700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1304996-1306995 Phaseolus vulgaris
Phvul.003G012700 5.0kb upstream 5.0kb upstream 7626 true Chr03: 1297370-1304995 Phaseolus vulgaris
Phvul.003G012700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1297370-1302369 Phaseolus vulgaris
Phvul.003G012700 5.0kb downstream 5.0kb downstream 7626 true Chr03: 1302370-1309995 Phaseolus vulgaris
Phvul.003G012700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1304996-1309995 Phaseolus vulgaris
Phvul.003G012700 10.0kb upstream 10.0kb upstream 12626 true Chr03: 1292370-1304995 Phaseolus vulgaris
Phvul.003G012700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1292370-1302369 Phaseolus vulgaris
Phvul.003G012700 10.0kb downstream 10.0kb downstream 12626 true Chr03: 1302370-1314995 Phaseolus vulgaris
Phvul.003G012700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1304996-1314995 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300181 5265 Fabidae View MSA
124063635 5270 Rosid View MSA
123750862 5271 Pentapetalae View MSA
122792992 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.27778 0.0 9.22141   Low
cufflinks 4.95371 0.0 13.4495    
cufflinks 4.34401 0.0 11.9424    
cufflinks 5.13891 0.0 13.9439    
cufflinks 5.80728 0.0 15.5295    
cufflinks 4.53389 0.0 12.41    
cufflinks 4.93992 0.0 13.3594    
cufflinks 4.42811 0.0 12.1459    
cufflinks 4.57993 0.0 12.4984    
cufflinks 6.70016 0.0 17.7659   High
cufflinks 6.58436 0.0 17.4429   High

0 Strain