Gene : Phvul.003G016300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10788:SF48 - ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 Genomic Order:  171
Name:  ? Phvul.003G016300 Secondary Identifier:  ? PAC:37145062
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G016300 0.5kb upstream 0.5kb upstream 4986 true Chr03: 1606528-1611513 Phaseolus vulgaris
Phvul.003G016300 0.5kb upstream 0.5kb upstream 500 false Chr03: 1606528-1607027 Phaseolus vulgaris
Phvul.003G016300 0.5kb downstream 0.5kb downstream 4986 true Chr03: 1607028-1612013 Phaseolus vulgaris
Phvul.003G016300 0.5kb downstream 0.5kb downstream 500 false Chr03: 1611514-1612013 Phaseolus vulgaris
Phvul.003G016300 1.0kb upstream 1.0kb upstream 5486 true Chr03: 1606028-1611513 Phaseolus vulgaris
Phvul.003G016300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1606028-1607027 Phaseolus vulgaris
Phvul.003G016300 1.0kb downstream 1.0kb downstream 5486 true Chr03: 1607028-1612513 Phaseolus vulgaris
Phvul.003G016300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1611514-1612513 Phaseolus vulgaris
Phvul.003G016300 2.0kb upstream 2.0kb upstream 6486 true Chr03: 1605028-1611513 Phaseolus vulgaris
Phvul.003G016300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1605028-1607027 Phaseolus vulgaris
Phvul.003G016300 2.0kb downstream 2.0kb downstream 6486 true Chr03: 1607028-1613513 Phaseolus vulgaris
Phvul.003G016300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1611514-1613513 Phaseolus vulgaris
Phvul.003G016300 5.0kb upstream 5.0kb upstream 9486 true Chr03: 1602028-1611513 Phaseolus vulgaris
Phvul.003G016300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1602028-1607027 Phaseolus vulgaris
Phvul.003G016300 5.0kb downstream 5.0kb downstream 9486 true Chr03: 1607028-1616513 Phaseolus vulgaris
Phvul.003G016300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1611514-1616513 Phaseolus vulgaris
Phvul.003G016300 10.0kb upstream 10.0kb upstream 14486 true Chr03: 1597028-1611513 Phaseolus vulgaris
Phvul.003G016300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1597028-1607027 Phaseolus vulgaris
Phvul.003G016300 10.0kb downstream 10.0kb downstream 14486 true Chr03: 1607028-1621513 Phaseolus vulgaris
Phvul.003G016300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1611514-1621513 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311235 5265 Fabidae View MSA
124065134 5270 Rosid View MSA
123751102 5271 Pentapetalae View MSA
122786361 5272 Eudicot View MSA
122049755 5273 Angiosperm View MSA
121348711 5274 Embryophyte View MSA
123425695 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.5693 0.0 73.4692    
cufflinks 24.8927 0.0 65.8211    
cufflinks 30.3107 0.0 81.5584    
cufflinks 16.4759 0.0 42.6655    
cufflinks 26.1095 0.0 69.0746    
cufflinks 19.5279 0.0 50.9684    
cufflinks 14.583 0.0 37.7438   Low
cufflinks 16.5733 0.0 43.0422    
cufflinks 35.0648 0.0 95.1538 High  
cufflinks 54.6624 0.0 155.499 High High
cufflinks 18.8915 0.0 49.1597    

0 Strain