Gene : Phvul.003G005400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR20932:SF8 - PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN Genomic Order:  9
Name:  ? Phvul.003G005400 Secondary Identifier:  ? PAC:37146190
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G005400 0.5kb upstream 0.5kb upstream 4475 true Chr03: 75281-79755 Phaseolus vulgaris
Phvul.003G005400 0.5kb upstream 0.5kb upstream 500 false Chr03: 75281-75780 Phaseolus vulgaris
Phvul.003G005400 0.5kb downstream 0.5kb downstream 4475 true Chr03: 75781-80255 Phaseolus vulgaris
Phvul.003G005400 0.5kb downstream 0.5kb downstream 500 false Chr03: 79756-80255 Phaseolus vulgaris
Phvul.003G005400 1.0kb upstream 1.0kb upstream 4975 true Chr03: 74781-79755 Phaseolus vulgaris
Phvul.003G005400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 74781-75780 Phaseolus vulgaris
Phvul.003G005400 1.0kb downstream 1.0kb downstream 4975 true Chr03: 75781-80755 Phaseolus vulgaris
Phvul.003G005400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 79756-80755 Phaseolus vulgaris
Phvul.003G005400 2.0kb upstream 2.0kb upstream 5975 true Chr03: 73781-79755 Phaseolus vulgaris
Phvul.003G005400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 73781-75780 Phaseolus vulgaris
Phvul.003G005400 2.0kb downstream 2.0kb downstream 5975 true Chr03: 75781-81755 Phaseolus vulgaris
Phvul.003G005400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 79756-81755 Phaseolus vulgaris
Phvul.003G005400 5.0kb upstream 5.0kb upstream 8975 true Chr03: 70781-79755 Phaseolus vulgaris
Phvul.003G005400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 70781-75780 Phaseolus vulgaris
Phvul.003G005400 5.0kb downstream 5.0kb downstream 8975 true Chr03: 75781-84755 Phaseolus vulgaris
Phvul.003G005400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 79756-84755 Phaseolus vulgaris
Phvul.003G005400 10.0kb upstream 10.0kb upstream 13975 true Chr03: 65781-79755 Phaseolus vulgaris
Phvul.003G005400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 65781-75780 Phaseolus vulgaris
Phvul.003G005400 10.0kb downstream 10.0kb downstream 13975 true Chr03: 75781-89755 Phaseolus vulgaris
Phvul.003G005400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 79756-89755 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040928 5273 Angiosperm View MSA
122308369 5265 Fabidae View MSA
124070010 5270 Rosid View MSA
123744886 5271 Pentapetalae View MSA
122793061 5272 Eudicot View MSA
121350889 5274 Embryophyte View MSA
123426344 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.13795 0.0 18.5275    
cufflinks 2.05822 0.0 7.15214   Low
cufflinks 7.05287 0.0 28.1655   High
cufflinks 3.67415 0.0 15.7056    
cufflinks 3.22958 0.0 13.5447    
cufflinks 3.38288 0.0 14.803    
cufflinks 2.60614 0.0 8.76673    
cufflinks 2.6804 0.0 11.5177    
cufflinks 2.26186 0.0 11.0877   Low
cufflinks 3.8979 0.0 15.9491    
cufflinks 3.55512 0.0 15.9474    

0 Strain