Gene : Phvul.003G005900 P. vulgaris v2.1
Defline:  (1 of 29) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  4
Name:  ? Phvul.003G005900 Secondary Identifier:  ? PAC:37147844
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G005900 0.5kb upstream 0.5kb upstream 2217 true Chr03: 22147-24363 Phaseolus vulgaris
Phvul.003G005900 0.5kb upstream 0.5kb upstream 500 false Chr03: 23864-24363 Phaseolus vulgaris
Phvul.003G005900 0.5kb downstream 0.5kb downstream 2217 true Chr03: 21647-23863 Phaseolus vulgaris
Phvul.003G005900 0.5kb downstream 0.5kb downstream 500 false Chr03: 21647-22146 Phaseolus vulgaris
Phvul.003G005900 1.0kb upstream 1.0kb upstream 2717 true Chr03: 22147-24863 Phaseolus vulgaris
Phvul.003G005900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 23864-24863 Phaseolus vulgaris
Phvul.003G005900 1.0kb downstream 1.0kb downstream 2717 true Chr03: 21147-23863 Phaseolus vulgaris
Phvul.003G005900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 21147-22146 Phaseolus vulgaris
Phvul.003G005900 2.0kb upstream 2.0kb upstream 3717 true Chr03: 22147-25863 Phaseolus vulgaris
Phvul.003G005900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 23864-25863 Phaseolus vulgaris
Phvul.003G005900 2.0kb downstream 2.0kb downstream 3717 true Chr03: 20147-23863 Phaseolus vulgaris
Phvul.003G005900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 20147-22146 Phaseolus vulgaris
Phvul.003G005900 5.0kb upstream 5.0kb upstream 6717 true Chr03: 22147-28863 Phaseolus vulgaris
Phvul.003G005900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 23864-28863 Phaseolus vulgaris
Phvul.003G005900 5.0kb downstream 5.0kb downstream 6717 true Chr03: 17147-23863 Phaseolus vulgaris
Phvul.003G005900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 17147-22146 Phaseolus vulgaris
Phvul.003G005900 10.0kb upstream 10.0kb upstream 11717 true Chr03: 22147-33863 Phaseolus vulgaris
Phvul.003G005900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 23864-33863 Phaseolus vulgaris
Phvul.003G005900 10.0kb downstream 10.0kb downstream 11717 true Chr03: 12147-23863 Phaseolus vulgaris
Phvul.003G005900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 12147-22146 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041181 5273 Angiosperm View MSA
122308364 5265 Fabidae View MSA
124063863 5270 Rosid View MSA
123748869 5271 Pentapetalae View MSA
122792190 5272 Eudicot View MSA
121309811 5274 Embryophyte View MSA
123347464 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.27534 0.0 12.16   Low
cufflinks 7.66535 0.0 20.6868    
cufflinks 17.7521 0.0 45.953    
cufflinks 8.95346 0.0 24.0016    
cufflinks 12.4787 0.0 32.5985    
cufflinks 18.6757 0.0 48.2964    
cufflinks 15.3504 0.0 39.7744    
cufflinks 17.9303 0.0 46.3882    
cufflinks 9.37272 0.0 24.9133    
cufflinks 37.5778 0.0 98.9129 High High
cufflinks 7.79582 0.0 20.92    

0 Strain