Gene : Phvul.002G333400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22778:SF18 - RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 8, CHLOROPLASTIC Genomic Order:  3334
Name:  ? Phvul.002G333400 Secondary Identifier:  ? PAC:37176540
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G333400 0.5kb upstream 0.5kb upstream 5077 true Chr02: 49648127-49653203 Phaseolus vulgaris
Phvul.002G333400 0.5kb upstream 0.5kb upstream 500 false Chr02: 49652704-49653203 Phaseolus vulgaris
Phvul.002G333400 0.5kb downstream 0.5kb downstream 5077 true Chr02: 49647627-49652703 Phaseolus vulgaris
Phvul.002G333400 0.5kb downstream 0.5kb downstream 500 false Chr02: 49647627-49648126 Phaseolus vulgaris
Phvul.002G333400 1.0kb upstream 1.0kb upstream 5577 true Chr02: 49648127-49653703 Phaseolus vulgaris
Phvul.002G333400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 49652704-49653703 Phaseolus vulgaris
Phvul.002G333400 1.0kb downstream 1.0kb downstream 5577 true Chr02: 49647127-49652703 Phaseolus vulgaris
Phvul.002G333400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 49647127-49648126 Phaseolus vulgaris
Phvul.002G333400 2.0kb upstream 2.0kb upstream 6577 true Chr02: 49648127-49654703 Phaseolus vulgaris
Phvul.002G333400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 49652704-49654703 Phaseolus vulgaris
Phvul.002G333400 2.0kb downstream 2.0kb downstream 6577 true Chr02: 49646127-49652703 Phaseolus vulgaris
Phvul.002G333400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 49646127-49648126 Phaseolus vulgaris
Phvul.002G333400 5.0kb upstream 5.0kb upstream 9577 true Chr02: 49648127-49657703 Phaseolus vulgaris
Phvul.002G333400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 49652704-49657703 Phaseolus vulgaris
Phvul.002G333400 5.0kb downstream 5.0kb downstream 9577 true Chr02: 49643127-49652703 Phaseolus vulgaris
Phvul.002G333400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 49643127-49648126 Phaseolus vulgaris
Phvul.002G333400 10.0kb upstream 10.0kb upstream 14577 true Chr02: 49648127-49662703 Phaseolus vulgaris
Phvul.002G333400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 49652704-49662703 Phaseolus vulgaris
Phvul.002G333400 10.0kb downstream 10.0kb downstream 14577 true Chr02: 49638127-49652703 Phaseolus vulgaris
Phvul.002G333400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 49638127-49648126 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309804 5265 Fabidae View MSA
124065740 5270 Rosid View MSA
123736994 5271 Pentapetalae View MSA
122787979 5272 Eudicot View MSA
122046672 5273 Angiosperm View MSA
121346147 5274 Embryophyte View MSA
123427771 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.25919 0.0 16.1763    
cufflinks 4.61333 0.0 21.9118    
cufflinks 8.94795 0.0 33.2857   High
cufflinks 4.3051 0.0 17.2614    
cufflinks 3.59055 0.0 14.6522    
cufflinks 6.95653 0.0 27.962   High
cufflinks 1.74191 0.0 8.52864   Low
cufflinks 2.18091 0.0 12.1935    
cufflinks 1.63043 0.0 8.33125   Low
cufflinks 4.04122 0.0 19.9454    
cufflinks 2.34488 0.0 12.6333    

0 Strain