Gene : Phvul.003G105100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  987
Name:  ? Phvul.003G105100 Secondary Identifier:  ? PAC:37146295
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G105100 0.5kb upstream 0.5kb upstream 4090 true Chr03: 23321622-23325711 Phaseolus vulgaris
Phvul.003G105100 0.5kb upstream 0.5kb upstream 500 false Chr03: 23321622-23322121 Phaseolus vulgaris
Phvul.003G105100 0.5kb downstream 0.5kb downstream 4090 true Chr03: 23322122-23326211 Phaseolus vulgaris
Phvul.003G105100 0.5kb downstream 0.5kb downstream 500 false Chr03: 23325712-23326211 Phaseolus vulgaris
Phvul.003G105100 1.0kb upstream 1.0kb upstream 4590 true Chr03: 23321122-23325711 Phaseolus vulgaris
Phvul.003G105100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 23321122-23322121 Phaseolus vulgaris
Phvul.003G105100 1.0kb downstream 1.0kb downstream 4590 true Chr03: 23322122-23326711 Phaseolus vulgaris
Phvul.003G105100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 23325712-23326711 Phaseolus vulgaris
Phvul.003G105100 2.0kb upstream 2.0kb upstream 5590 true Chr03: 23320122-23325711 Phaseolus vulgaris
Phvul.003G105100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 23320122-23322121 Phaseolus vulgaris
Phvul.003G105100 2.0kb downstream 2.0kb downstream 5590 true Chr03: 23322122-23327711 Phaseolus vulgaris
Phvul.003G105100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 23325712-23327711 Phaseolus vulgaris
Phvul.003G105100 5.0kb upstream 5.0kb upstream 8590 true Chr03: 23317122-23325711 Phaseolus vulgaris
Phvul.003G105100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 23317122-23322121 Phaseolus vulgaris
Phvul.003G105100 5.0kb downstream 5.0kb downstream 8590 true Chr03: 23322122-23330711 Phaseolus vulgaris
Phvul.003G105100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 23325712-23330711 Phaseolus vulgaris
Phvul.003G105100 10.0kb upstream 10.0kb upstream 13590 true Chr03: 23312122-23325711 Phaseolus vulgaris
Phvul.003G105100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 23312122-23322121 Phaseolus vulgaris
Phvul.003G105100 10.0kb downstream 10.0kb downstream 13590 true Chr03: 23322122-23335711 Phaseolus vulgaris
Phvul.003G105100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 23325712-23335711 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122303941 5265 Fabidae View MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.2804 0.0 48.7788   High
cufflinks 7.07358 0.0 20.5941    
cufflinks 5.94006 0.0 17.5924   Low
cufflinks 11.3596 0.0 31.8543    
cufflinks 8.34409 0.0 24.0899    
cufflinks 6.09987 0.0 18.0248   Low
cufflinks 14.5879 0.0 39.5689   High
cufflinks 12.8468 0.0 35.1272    
cufflinks 12.2826 0.0 33.919    
cufflinks 10.2212 0.0 28.7341    
cufflinks 9.95603 0.0 28.1237    

0 Strain