Gene : Phvul.003G103500 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11064:SF42 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 Genomic Order:  1003
Name:  ? Phvul.003G103500 Secondary Identifier:  ? PAC:37145097
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G103500 0.5kb upstream 0.5kb upstream 1390 true Chr03: 23913014-23914403 Phaseolus vulgaris
Phvul.003G103500 0.5kb upstream 0.5kb upstream 500 false Chr03: 23913904-23914403 Phaseolus vulgaris
Phvul.003G103500 0.5kb downstream 0.5kb downstream 1390 true Chr03: 23912514-23913903 Phaseolus vulgaris
Phvul.003G103500 0.5kb downstream 0.5kb downstream 500 false Chr03: 23912514-23913013 Phaseolus vulgaris
Phvul.003G103500 1.0kb upstream 1.0kb upstream 1890 true Chr03: 23913014-23914903 Phaseolus vulgaris
Phvul.003G103500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 23913904-23914903 Phaseolus vulgaris
Phvul.003G103500 1.0kb downstream 1.0kb downstream 1890 true Chr03: 23912014-23913903 Phaseolus vulgaris
Phvul.003G103500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 23912014-23913013 Phaseolus vulgaris
Phvul.003G103500 2.0kb upstream 2.0kb upstream 2890 true Chr03: 23913014-23915903 Phaseolus vulgaris
Phvul.003G103500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 23913904-23915903 Phaseolus vulgaris
Phvul.003G103500 2.0kb downstream 2.0kb downstream 2890 true Chr03: 23911014-23913903 Phaseolus vulgaris
Phvul.003G103500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 23911014-23913013 Phaseolus vulgaris
Phvul.003G103500 5.0kb upstream 5.0kb upstream 5890 true Chr03: 23913014-23918903 Phaseolus vulgaris
Phvul.003G103500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 23913904-23918903 Phaseolus vulgaris
Phvul.003G103500 5.0kb downstream 5.0kb downstream 5890 true Chr03: 23908014-23913903 Phaseolus vulgaris
Phvul.003G103500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 23908014-23913013 Phaseolus vulgaris
Phvul.003G103500 10.0kb upstream 10.0kb upstream 10890 true Chr03: 23913014-23923903 Phaseolus vulgaris
Phvul.003G103500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 23913904-23923903 Phaseolus vulgaris
Phvul.003G103500 10.0kb downstream 10.0kb downstream 10890 true Chr03: 23903014-23913903 Phaseolus vulgaris
Phvul.003G103500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 23903014-23913013 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041139 5273 Angiosperm View MSA
122315080 5265 Fabidae View MSA
124070521 5270 Rosid View MSA
123747842 5271 Pentapetalae View MSA
122796503 5272 Eudicot View MSA
123429094 5275 Viridiplantae View MSA
121350139 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0463039 0.0 0.229482 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0590473 0.0 0.284697 Low  
cufflinks 2.31044 0.0 7.98161   High
cufflinks 3.47967 0.0 11.4661   High
cufflinks 0.108885 0.0 0.491994 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0480332 0.0 0.238295 Low  

0 Strain