Gene : Phvul.003G105600 P. vulgaris v2.1
Defline:  (1 of 2) 6.1.1.5 - Isoleucine--tRNA ligase / Isoleucyl-tRNA synthetase Genomic Order:  982
Name:  ? Phvul.003G105600 Secondary Identifier:  ? PAC:37144600
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G105600 0.5kb upstream 0.5kb upstream 12871 true Chr03: 23244752-23257622 Phaseolus vulgaris
Phvul.003G105600 0.5kb upstream 0.5kb upstream 500 false Chr03: 23244752-23245251 Phaseolus vulgaris
Phvul.003G105600 0.5kb downstream 0.5kb downstream 12871 true Chr03: 23245252-23258122 Phaseolus vulgaris
Phvul.003G105600 0.5kb downstream 0.5kb downstream 500 false Chr03: 23257623-23258122 Phaseolus vulgaris
Phvul.003G105600 1.0kb upstream 1.0kb upstream 13371 true Chr03: 23244252-23257622 Phaseolus vulgaris
Phvul.003G105600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 23244252-23245251 Phaseolus vulgaris
Phvul.003G105600 1.0kb downstream 1.0kb downstream 13371 true Chr03: 23245252-23258622 Phaseolus vulgaris
Phvul.003G105600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 23257623-23258622 Phaseolus vulgaris
Phvul.003G105600 2.0kb upstream 2.0kb upstream 14371 true Chr03: 23243252-23257622 Phaseolus vulgaris
Phvul.003G105600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 23243252-23245251 Phaseolus vulgaris
Phvul.003G105600 2.0kb downstream 2.0kb downstream 14371 true Chr03: 23245252-23259622 Phaseolus vulgaris
Phvul.003G105600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 23257623-23259622 Phaseolus vulgaris
Phvul.003G105600 5.0kb upstream 5.0kb upstream 17371 true Chr03: 23240252-23257622 Phaseolus vulgaris
Phvul.003G105600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 23240252-23245251 Phaseolus vulgaris
Phvul.003G105600 5.0kb downstream 5.0kb downstream 17371 true Chr03: 23245252-23262622 Phaseolus vulgaris
Phvul.003G105600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 23257623-23262622 Phaseolus vulgaris
Phvul.003G105600 10.0kb upstream 10.0kb upstream 22371 true Chr03: 23235252-23257622 Phaseolus vulgaris
Phvul.003G105600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 23235252-23245251 Phaseolus vulgaris
Phvul.003G105600 10.0kb downstream 10.0kb downstream 22371 true Chr03: 23245252-23267622 Phaseolus vulgaris
Phvul.003G105600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 23257623-23267622 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308695 5265 Fabidae View MSA
124064635 5270 Rosid View MSA
123740769 5271 Pentapetalae View MSA
122790755 5272 Eudicot View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.66665 0.0 12.5797    
cufflinks 8.20262 0.0 21.3541    
cufflinks 48.359 0.0 136.461 High High
cufflinks 4.02865 0.0 11.0821    
cufflinks 5.71829 0.0 15.2659    
cufflinks 28.8744 0.0 77.3542   High
cufflinks 5.09164 0.0 13.6386    
cufflinks 5.68347 0.0 15.0369    
cufflinks 4.5036 0.0 12.2082    
cufflinks 7.84581 0.0 20.4682    
cufflinks 4.12756 0.0 11.3015    

0 Strain