Gene : Phvul.003G109100 P. vulgaris v2.1
Defline:  (1 of 46) PF00407 - Pathogenesis-related protein Bet v I family (Bet_v_1) Genomic Order:  1096
Name:  ? Phvul.003G109100 Secondary Identifier:  ? PAC:37148099
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G109100 0.5kb upstream 0.5kb upstream 1517 true Chr03: 27561953-27563469 Phaseolus vulgaris
Phvul.003G109100 0.5kb upstream 0.5kb upstream 500 false Chr03: 27562970-27563469 Phaseolus vulgaris
Phvul.003G109100 0.5kb downstream 0.5kb downstream 1517 true Chr03: 27561453-27562969 Phaseolus vulgaris
Phvul.003G109100 0.5kb downstream 0.5kb downstream 500 false Chr03: 27561453-27561952 Phaseolus vulgaris
Phvul.003G109100 1.0kb upstream 1.0kb upstream 2017 true Chr03: 27561953-27563969 Phaseolus vulgaris
Phvul.003G109100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 27562970-27563969 Phaseolus vulgaris
Phvul.003G109100 1.0kb downstream 1.0kb downstream 2017 true Chr03: 27560953-27562969 Phaseolus vulgaris
Phvul.003G109100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 27560953-27561952 Phaseolus vulgaris
Phvul.003G109100 2.0kb upstream 2.0kb upstream 3017 true Chr03: 27561953-27564969 Phaseolus vulgaris
Phvul.003G109100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 27562970-27564969 Phaseolus vulgaris
Phvul.003G109100 2.0kb downstream 2.0kb downstream 3017 true Chr03: 27559953-27562969 Phaseolus vulgaris
Phvul.003G109100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 27559953-27561952 Phaseolus vulgaris
Phvul.003G109100 5.0kb upstream 5.0kb upstream 6017 true Chr03: 27561953-27567969 Phaseolus vulgaris
Phvul.003G109100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 27562970-27567969 Phaseolus vulgaris
Phvul.003G109100 5.0kb downstream 5.0kb downstream 6017 true Chr03: 27556953-27562969 Phaseolus vulgaris
Phvul.003G109100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 27556953-27561952 Phaseolus vulgaris
Phvul.003G109100 10.0kb upstream 10.0kb upstream 11017 true Chr03: 27561953-27572969 Phaseolus vulgaris
Phvul.003G109100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 27562970-27572969 Phaseolus vulgaris
Phvul.003G109100 10.0kb downstream 10.0kb downstream 11017 true Chr03: 27551953-27562969 Phaseolus vulgaris
Phvul.003G109100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 27551953-27561952 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312983 5265 Fabidae View MSA
124072279 5270 Rosid View MSA
123752390 5271 Pentapetalae View MSA
122797871 5272 Eudicot View MSA
122048225 5273 Angiosperm View MSA
121351454 5274 Embryophyte View MSA
123382173 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 360.677 0.0 1071.34 High  
cufflinks 54.158 0.0 140.04 High  
cufflinks 3.86593 0.0 12.4963   Low
cufflinks 115.292 0.0 304.134 High  
cufflinks 71.2424 0.0 184.256 High  
cufflinks 11.2326 0.0 32.2371   Low
cufflinks 888.393 0.0 3135.87 High High
cufflinks 407.426 0.0 1237.62 High  
cufflinks 2067.04 0.0 9095.19 High High
cufflinks 551.947 0.0 1749.13 High  
cufflinks 33.8288 0.0 88.9395    

0 Strain