Gene : Phvul.003G109200 P. vulgaris v2.1
Defline:  (1 of 46) PF00407 - Pathogenesis-related protein Bet v I family (Bet_v_1) Genomic Order:  1097
Name:  ? Phvul.003G109200 Secondary Identifier:  ? PAC:37146076
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G109200 0.5kb upstream 0.5kb upstream 1458 true Chr03: 27588464-27589921 Phaseolus vulgaris
Phvul.003G109200 0.5kb upstream 0.5kb upstream 500 false Chr03: 27589422-27589921 Phaseolus vulgaris
Phvul.003G109200 0.5kb downstream 0.5kb downstream 1458 true Chr03: 27587964-27589421 Phaseolus vulgaris
Phvul.003G109200 0.5kb downstream 0.5kb downstream 500 false Chr03: 27587964-27588463 Phaseolus vulgaris
Phvul.003G109200 1.0kb upstream 1.0kb upstream 1958 true Chr03: 27588464-27590421 Phaseolus vulgaris
Phvul.003G109200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 27589422-27590421 Phaseolus vulgaris
Phvul.003G109200 1.0kb downstream 1.0kb downstream 1958 true Chr03: 27587464-27589421 Phaseolus vulgaris
Phvul.003G109200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 27587464-27588463 Phaseolus vulgaris
Phvul.003G109200 2.0kb upstream 2.0kb upstream 2958 true Chr03: 27588464-27591421 Phaseolus vulgaris
Phvul.003G109200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 27589422-27591421 Phaseolus vulgaris
Phvul.003G109200 2.0kb downstream 2.0kb downstream 2958 true Chr03: 27586464-27589421 Phaseolus vulgaris
Phvul.003G109200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 27586464-27588463 Phaseolus vulgaris
Phvul.003G109200 5.0kb upstream 5.0kb upstream 5958 true Chr03: 27588464-27594421 Phaseolus vulgaris
Phvul.003G109200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 27589422-27594421 Phaseolus vulgaris
Phvul.003G109200 5.0kb downstream 5.0kb downstream 5958 true Chr03: 27583464-27589421 Phaseolus vulgaris
Phvul.003G109200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 27583464-27588463 Phaseolus vulgaris
Phvul.003G109200 10.0kb upstream 10.0kb upstream 10958 true Chr03: 27588464-27599421 Phaseolus vulgaris
Phvul.003G109200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 27589422-27599421 Phaseolus vulgaris
Phvul.003G109200 10.0kb downstream 10.0kb downstream 10958 true Chr03: 27578464-27589421 Phaseolus vulgaris
Phvul.003G109200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 27578464-27588463 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312983 5265 Fabidae View MSA
124072279 5270 Rosid View MSA
123752390 5271 Pentapetalae View MSA
122797871 5272 Eudicot View MSA
122048225 5273 Angiosperm View MSA
121351454 5274 Embryophyte View MSA
123382173 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.53126 0.0 22.4478   High
cufflinks 1.02048 0.0 3.78088    
cufflinks 0.145983 0.0 0.635051 Low Low
cufflinks 9.91386 0.0 28.771   High
cufflinks 0.253717 0.0 1.05356 Low  
cufflinks 0.067794 0.0 0.318329 Low Low
cufflinks 11.7087 0.0 33.2387   High
cufflinks 4.48477 0.0 14.2132    
cufflinks 2.69522 0.0 9.02959    
cufflinks 0.199951 0.0 0.846748 Low  
cufflinks 0.256252 0.0 1.06209 Low  

0 Strain